Rv3854c - p.Trp256*
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
14 HR-TB
92 MDR-TB
58 Pre-XDR-TB
4 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 137 |
| lineage2.2.1.1 | 3 |
| lineage4.3.4.2 | 4 |
| lineage2.2.1.2 | 1 |
| lineage4.8 | 19 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| lineage4.1.2.1 | 1 |
| lineage2.2.1;lineage4.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 168 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR2041705 | MDR-TB | lineage2.2.1 | None | ERR13276026 | MDR-TB | lineage2.2.1 | None | SRR6484938 | HR-TB | lineage2.2.1 | None | SRR7653612 | HR-TB | lineage2.2.1 | None | ERR13261197 | HR-TB | lineage2.2.1.1 | None | SRR13583499 | MDR-TB | lineage4.3.4.2 | None | ERR5864997 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665691 | Pre-XDR-TB | lineage2.2.1 | None | SRR5153713 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045407 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR13232737 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864993 | MDR-TB | lineage2.2.1 | None | SRR4423163 | Pre-XDR-TB | lineage4.8 | None | ERR5864996 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173792 | Pre-XDR-TB | lineage2.2.1 | None | SRR29016834 | MDR-TB | lineage4.8 | None | ERR11811359 | MDR-TB | lineage2.2.1 | None | SRR10397185 | Pre-XDR-TB | lineage2.2.1 | None | SRR29051050 | MDR-TB | lineage4.3.4.2 | None | ERR5866239 | MDR-TB | lineage2.2.1 | None | SRR29539728 | MDR-TB | lineage2.2.1 | None | SRR29017261 | MDR-TB | lineage4.8 | None | ERR2041694 | MDR-TB | lineage2.2.1 | None | SRR7652971 | MDR-TB | lineage2.2.1 | None | ERR5865877 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232570 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864988 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864994 | MDR-TB | lineage2.2.1 | None | ERR2041715 | MDR-TB | lineage2.2.1 | None | ERR4797378 | XDR-TB | lineage2.2.1.1 | in | SRR13583510 | MDR-TB | lineage4.3.4.2 | None | ERR502891 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831244 | Pre-XDR-TB | lineage2.2.1 | de | ERR4822603 | Pre-XDR-TB | lineage2.2.1 | de | ERR4822608 | Pre-XDR-TB | lineage2.2.1 | de | ERR8665838 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865721 | MDR-TB | lineage2.2.1 | None | ERR5865876 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173628 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173675 | Pre-XDR-TB | lineage2.2.1 | None | SRR6256968 | MDR-TB | lineage2.2.1 | None | ERR229936 | MDR-TB | lineage2.2.1 | ru | ERR133888 | HR-TB | lineage2.2.1 | ru | ERR133900 | Pre-XDR-TB | lineage2.2.1 | ru | ERR133815 | HR-TB | lineage2.2.1 | ru | ERR234649 | MDR-TB | lineage2.2.1 | ru | ERR144635 | MDR-TB | lineage2.2.1 | ru | ERR144542 | Pre-XDR-TB | lineage2.2.1 | ru | ERR067586 | HR-TB | lineage2.2.1 | ru | ERR9119676 | MDR-TB | lineage2.2.1 | None | SRR16088406 | Pre-XDR-TB | lineage2.2.1 | None | SRR5152896 | MDR-TB | lineage2.2.1 | None | ERR5866238 | MDR-TB | lineage2.2.1 | None | ERR234566 | MDR-TB | lineage2.2.1;lineage4.8 | None | ERR5866586 | HR-TB | lineage2.2.1 | None | ERR4553748 | MDR-TB | lineage4.8 | None | ERR2041716 | MDR-TB | lineage2.2.1 | None | SRR10397262 | Pre-XDR-TB | lineage2.2.1 | None | SRR29017624 | MDR-TB | lineage4.8 | None | ERR5865737 | MDR-TB | lineage2.2.1 | None | ERR13275896 | MDR-TB | lineage2.2.1 | None | ERR13284081 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553619 | MDR-TB | lineage4.8 | None | SRR24255941 | MDR-TB | lineage2.2.1 | None | ERR5865722 | MDR-TB | lineage2.2.1 | None | ERR2041703 | MDR-TB | lineage2.2.1 | None | ERR5864992 | MDR-TB | lineage2.2.1 | None | SRR1173393 | Pre-XDR-TB | lineage2.2.1 | None | SRR6785371 | HR-TB | lineage2.2.1 | None | ERR2307778 | MDR-TB | lineage2.2.1 | None | ERR2307555 | MDR-TB | lineage2.2.1 | None | ERR13276210 | Pre-XDR-TB | lineage2.2.1 | None | ERR13273380 | MDR-TB | lineage2.2.1 | None | SRR29017037 | MDR-TB | lineage4.8 | None | SRR13232488 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232567 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539268 | MDR-TB | lineage2.2.1 | None | ERR2041799 | MDR-TB | lineage2.2.1 | None | SRR29539654 | MDR-TB | lineage2.2.1 | None | ERR13276007 | HR-TB | lineage2.2.1 | None | ERR13261995 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR11811378 | MDR-TB | lineage2.2.1 | None | SRR29017254 | MDR-TB | lineage4.8 | None | ERR4553835 | MDR-TB | lineage4.8 | None | SRR16088054 | MDR-TB | lineage2.2.1 | None | SRR6257108 | MDR-TB | lineage2.2.1 | None | ERR5866587 | MDR-TB | lineage2.2.1 | None | ERR13273248 | MDR-TB | lineage2.2.1 | None | SAMN02628499 | Pre-XDR-TB | lineage2.2.1 | ir | ERR8665690 | Pre-XDR-TB | lineage2.2.1 | None | ERR11068288 | MDR-TB | lineage2.2.1 | None | ERR11068701 | MDR-TB | lineage2.2.1 | None | SRR16370536 | MDR-TB | lineage2.2.1 | None | ERR4831250 | Pre-XDR-TB | lineage2.2.1 | de | ERR3639699 | MDR-TB | lineage2.2.1 | None | ERR2200148 | MDR-TB | lineage2.2.1 | rs | ERR2041706 | MDR-TB | lineage2.2.1 | rs | ERR2041800 | MDR-TB | lineage2.2.1 | rs | ERR2041691 | MDR-TB | lineage2.2.1 | rs | ERR2041704 | MDR-TB | lineage2.2.1 | rs | ERR2307642 | MDR-TB | lineage2.2.1 | None | ERR4553589 | MDR-TB | lineage4.8 | None | SRR16088543 | XDR-TB | lineage2.2.1 | None | ERR137194 | HR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR13290729 | Pre-XDR-TB | lineage2.2.1 | None | SRR7652977 | MDR-TB | lineage2.2.1 | None | ERR5864989 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864995 | MDR-TB | lineage2.2.1 | None | SRR29017451 | MDR-TB | lineage4.8 | None | ERR2041690 | MDR-TB | lineage2.2.1 | None | ERR5866240 | MDR-TB | lineage2.2.1 | None | SRR6785297 | MDR-TB | lineage2.2.1 | None | ERR10680120 | MDR-TB | lineage4.1.2.1 | None | SRR5153234 | Pre-XDR-TB | lineage2.2.1 | None | SRR6257003 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553790 | MDR-TB | lineage4.8 | None | ERR13284173 | MDR-TB | lineage2.2.1 | None | SRR13232572 | Pre-XDR-TB | lineage2.2.1 | None | SRR29017645 | MDR-TB | lineage4.8 | None | SRR29016940 | MDR-TB | lineage4.8 | None | SRR29538937 | Pre-XDR-TB | lineage2.2.1 | None | SRR5152963 | HR-TB | lineage2.2.1 | None | SRR1173722 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553428 | MDR-TB | lineage4.8 | None | SRR13232489 | Pre-XDR-TB | lineage2.2.1 | None | SRR22757398 | Pre-XDR-TB | lineage2.2.1 | None | SRR7517738 | MDR-TB | lineage2.2.1 | None | ERR13273347 | MDR-TB | lineage2.2.1 | None | ERR10465872 | Pre-XDR-TB | lineage2.2.1 | None | ERR11068518 | MDR-TB | lineage2.2.1 | None | ERR13276218 | XDR-TB | lineage2.2.1 | None | ERR2307372 | MDR-TB | lineage2.2.1 | None | ERR144591 | Pre-XDR-TB | lineage2.2.1 | ru | SRR7653084 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798119 | Pre-XDR-TB | lineage2.2.1 | in | ERR5864991 | MDR-TB | lineage2.2.1 | None | SRR1172711 | Pre-XDR-TB | lineage2.2.1 | None | SRR5152949 | HR-TB | lineage2.2.1 | None | ERR13276057 | MDR-TB | lineage2.2.1 | None | SRR13232491 | Pre-XDR-TB | lineage2.2.1 | None | ERR552766 | MDR-TB | lineage2.2.1 | None | SRR29050638 | MDR-TB | lineage4.3.4.2 | None | SAMN02628502 | Pre-XDR-TB | lineage2.2.1 | ir | SAMN02628501 | Pre-XDR-TB | lineage2.2.1 | ir | SAMN02628498 | Pre-XDR-TB | lineage2.2.1 | ir | SAMN02628500 | Pre-XDR-TB | lineage2.2.1 | ir | ERR5864990 | MDR-TB | lineage2.2.1 | None | ERR7911335 | MDR-TB | lineage2.2.1 | us | SRR1173842 | Pre-XDR-TB | lineage2.2.1 | None | SRR1174307 | Pre-XDR-TB | lineage2.2.1 | None | SRR5152958 | HR-TB | lineage2.2.1 | None | ERR2041685 | MDR-TB | lineage2.2.1 | None | ERR117456 | MDR-TB | lineage2.2.1 | ru | SRR1173446 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173750 | Pre-XDR-TB | lineage2.2.1 | None | ERR2307592 | MDR-TB | lineage2.2.1 | None | ERR4553723 | MDR-TB | lineage4.8 | None | ERR11044180 | XDR-TB | lineage2.2.1 | None | SRR5153618 | MDR-TB | lineage2.2.1 | None | SRR29538939 | MDR-TB | lineage2.2.1 | None | ERR8774578 | MDR-TB | lineage2.2.1 | None | ERR13275948 | MDR-TB | lineage2.2.1 | None | SRR29017106 | MDR-TB | lineage4.8 | None | ERR13276018 | MDR-TB | lineage2.2.1 | None | ERR4553767 | MDR-TB | lineage4.8 | None | ERR4553572 | Pre-XDR-TB | lineage4.8 | None | ERR13275971 | HR-TB | lineage2.2.1;lineage4.2.2 | None | ERR4276874 | Pre-XDR-TB | lineage2.2.1 | None |
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