lineage | Count |
---|---|
lineage4.3.4.2 | 26 |
lineage1.2.1.2.1 | 2 |
lineage4.1.2.1 | 21 |
lineage1.1.2 | 7 |
lineage4.3.3 | 3 |
lineage1.1.1.1 | 4 |
lineage4.2.2 | 1 |
lineage4 | 1 |
lineage3 | 13 |
lineage4.4.1.1 | 3 |
lineage4.8 | 2 |
lineage4.3.4.1 | 1 |
lineage4.4.1 | 1 |
lineage4.1.2 | 5 |
lineage4.7 | 5 |
lineage2.2.1.1 | 3 |
lineage4.9 | 2 |
lineage4.3.2 | 1 |
lineage4.1.1.3 | 1 |
lineage4.3.4.2;lineage2.2.1 | 1 |
lineage4.6.2.2 | 2 |
lineage2.2.1 | 1 |
lineage4.6.1.2 | 1 |
lineage2.2.2 | 1 |
lineage4.6.2.2;lineage4.2.2 | 1 |
1 |
spoligotype | Count |
---|---|
None | 110 |
ID | Drug resistance | Lineage | Country iso2 | ERR7910910 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR6336795 | Sensitive | lineage1.2.1.2.1 | None | ERR6866242 | Sensitive | lineage4.1.2.1 | None | ERR6866388 | HR-TB | lineage4.1.2.1 | None | ERR6879046 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR7975672 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR9891966 | Sensitive | lineage4.1.2.1 | None | SRR10380218 | MDR-TB | lineage4.3.4.2 | None | SRR11972379 | MDR-TB | lineage1.1.2 | None | SRR10380217 | MDR-TB | lineage4.3.4.2 | None | SRR1172849 | HR-TB | lineage1.1.2 | None | SRR1173044 | HR-TB | lineage1.1.2 | None | ERR11067646 | MDR-TB | lineage4.3.3 | None | SRR13870411 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR12882749 | Sensitive | lineage1.1.1.1 | None | SRR13180251 | MDR-TB | lineage4.3.3 | None | SRR13870412 | MDR-TB | lineage4.1.2.1 | None | SRR13870382 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR13870418 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR14782084 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR13870429 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR16088466 | MDR-TB | lineage4.3.4.2 | None | SRR15316263 | Sensitive | lineage4.2.2 | None | SRR14801976 | MDR-TB | lineage4.3.4.2 | None | SRR16100231 | Sensitive | lineage4 | None | SRR18665471 | MDR-TB | lineage4.1.2.1 | None | DRR261059 | Sensitive | lineage1.1.1.1 | None | SRR18714946 | MDR-TB | lineage4.3.4.2 | None | SRR18714945 | MDR-TB | lineage4.3.4.2 | None | ERR11082022 | Sensitive | lineage3 | None | SRR22424788 | MDR-TB | lineage1.1.2 | None | ERR11081851 | MDR-TB | lineage4.4.1.1 | None | ERR11082719 | MDR-TB | lineage4.3.4.2 | None | ERR11082637 | MDR-TB | lineage4.4.1.1 | None | ERR11082673 | MDR-TB | lineage4.8 | None | SRR25395643 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR23902038 | HR-TB | lineage4.3.4.1 | None | SRR24256026 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR11083019 | MDR-TB | lineage4.3.3 | None | SRR26399796 | Sensitive | lineage1.1.1.1 | None | SRR5341362 | HR-TB | lineage3 | in | SRR22251188 | HR-TB | lineage4.1.2.1 | None | SRR8380859 | MDR-TB | lineage3 | in | ERR4813819 | Pre-XDR-TB | lineage4.4.1 | None | ERR4813728 | MDR-TB | lineage4.1.2.1 | None | ERR4816791 | Sensitive | lineage3 | None | SRR5341348 | HR-TB | lineage3 | in | ERR1034783 | Pre-XDR-TB | lineage4.1.2.1 | pe | SRR5341339 | HR-TB | lineage3 | in | SRR5065267 | HR-TB | lineage4.1.2 | vn | ERR3275439 | Sensitive | lineage4.7 | nl | SRR5065450 | Sensitive | lineage2.2.1.1 | vn | ERR4820579 | Sensitive | lineage4.9 | None | SRR5067287 | HR-TB | lineage4.1.2 | vn | SRR5067660 | Sensitive | lineage2.2.1.1 | vn | SRR5067450 | Other | lineage2.2.1.1 | vn | SRR5153848 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR6152949 | Other | lineage1.2.1.2.1 | ca | ERR400448 | Other | lineage1.1.2 | gb | ERR751485 | MDR-TB | lineage4.3.2 | pe | SRR6152909 | Sensitive | lineage4.7 | ca | SRR6153168 | Sensitive | lineage3 | ca | ERR3148171 | MDR-TB | lineage4.1.1.3 | mx | ERR2446078 | Sensitive | lineage4.7 | nl | SRR2100405 | Sensitive | lineage3 | None | SAMN02599184 | HR-TB | lineage1.1.2 | in | ERR2517107 | MDR-TB | lineage4.3.4.2 | gb | ERR2516907 | MDR-TB | lineage4.3.4.2 | gb | ERR2516951 | MDR-TB | lineage4.3.4.2 | gb | ERR2516954 | MDR-TB | lineage4.3.4.2 | gb | ERR4799493 | Pre-XDR-TB | lineage3 | in | ERR2517165 | Sensitive | lineage4.7 | nl | ERR4828983 | MDR-TB | lineage4.1.2.1 | None | ERR2516857 | MDR-TB | lineage4.3.4.2 | gb | ERR4813372 | MDR-TB | lineage4.1.2.1 | pe | ERR4829373 | MDR-TB | lineage4.3.4.2 | it | ERR4816564 | HR-TB | lineage1.1.2 | gb | SRR6832471 | MDR-TB | lineage4.3.4.2;lineage2.2.1 | None | SRR6832665 | MDR-TB | lineage4.3.4.2 | None | SRR6832498 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR6832760 | MDR-TB | lineage4.3.4.2 | None | ERR4812352 | MDR-TB | lineage4.1.2.1 | pe | ERR4813103 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR4813172 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR4829973 | MDR-TB | lineage3 | pk | ERR3287736 | MDR-TB | lineage4.8 | pe | ERR4816972 | MDR-TB | lineage4.3.4.2 | gb | ERR2510687 | MDR-TB | lineage4.6.2.2 | it | SRR7829593 | MDR-TB | lineage4.6.2.2 | None | SRR8885131 | Sensitive | lineage4.9 | None | ERR10969127 | Sensitive | lineage4.7 | None | DRR188858 | Sensitive | lineage2.2.1 | None | ERR10748494 | MDR-TB | lineage4.6.1.2 | None | ERR10762327 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR11043325 | MDR-TB | lineage4.3.4.2 | None | ERR3287559 | MDR-TB | lineage4.1.2.1 | None | ERR4820941 | HR-TB | lineage3 | gb | ERR3287504 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR3287540 | MDR-TB | lineage4.1.2.1 | None | ERR4821657 | Sensitive | lineage3 | gb | ERR11798636 | MDR-TB | lineage4.3.4.2 | None | ERR3273197 | Pre-XDR-TB | lineage2.2.2 | None | ERR369620 | HR-TB | lineage4.6.2.2;lineage4.2.2 | None | ERR4553558 | MDR-TB | None | ERR400482 | Sensitive | lineage3 | None | ERR4828250 | Sensitive | lineage1.1.1.1 | vn | ERR4831869 | HR-TB | lineage4.1.2 | vn | ERR4828633 | HR-TB | lineage4.1.2 | vn | ERR4831858 | HR-TB | lineage4.1.2 | vn | ERR8699782 | RR-TB | lineage4.4.1.1 | None |
---|