Run ID: SRR16100231
Sample name:
Date: 03-04-2023 16:18:35
Number of reads: 1180355
Percentage reads mapped: 62.16
Strain: lineage4
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 575177 | c.-171G>C | upstream_gene_variant | 1.0 |
rpoB | 761889 | p.Val695Leu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 801009 | c.201A>G | synonymous_variant | 1.0 |
fbiC | 1305494 | c.2565_*55delGGCCTAGCCCCGGCGACGATGCCGGGTCGCGGGATGCGGCCCGTTGAGGAGCGGGGCAATCT | frameshift_variant&stop_lost&splice_region_variant | 0.43 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472240 | n.395G>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472242 | n.397C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472266 | n.421C>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472715 | n.870C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472812 | n.967A>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472887 | n.1042G>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476336 | n.2679C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476356 | n.2699C>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476357 | n.2700T>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476384 | n.2727G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476428 | n.2771C>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476443 | n.2786G>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476455 | n.2798C>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476521 | n.2864C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476528 | n.2871A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476535 | n.2879_2880delGA | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476539 | n.2882A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476541 | n.2885_2886insTT | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476569 | n.2912G>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476584 | n.2927C>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476586 | n.2929C>G | non_coding_transcript_exon_variant | 0.1 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223214 | c.-50A>C | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pepQ | 2860238 | p.Arg61Gly | missense_variant | 1.0 |
Rv2752c | 3065517 | c.675C>T | synonymous_variant | 1.0 |
fprA | 3474299 | p.Asp98Gly | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
ethA | 4328317 | c.-844C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407794 | p.Arg137Trp | missense_variant | 0.98 |
fbiC | 1305494 | c.2565_*56delCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | frameshift_variant&stop_lost&splice_region_variant | 1.0 |