Run ID: ERR046732
Sample name:
Date: 31-03-2023 08:48:17
Number of reads: 7688803
Percentage reads mapped: 99.31
Strain: lineage4.3.4.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 | 1.0 |
lineage4.3.4.2 | Euro-American (LAM) | LAM1;LAM4;LAM11 | RD174 | 1.0 |
lineage4.3.4.2.1 | Euro-American (LAM) | LAM11 | RD174 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6140 | p.Val301Leu | missense_variant | 0.99 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576751 | p.Lys468Asn | missense_variant | 0.21 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.37 |
rpoC | 764725 | p.Phe452Leu | missense_variant | 0.21 |
rpoC | 764751 | p.Val461Gly | missense_variant | 0.21 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406750 | c.591C>A | synonymous_variant | 0.21 |
atpE | 1461019 | c.-26C>A | upstream_gene_variant | 0.2 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475363 | n.1706C>A | non_coding_transcript_exon_variant | 0.26 |
inhA | 1674892 | p.Asn231Asp | missense_variant | 0.26 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.31 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.39 |
pepQ | 2859381 | c.1038C>G | synonymous_variant | 0.19 |
Rv2752c | 3064741 | p.Gly484Ala | missense_variant | 0.24 |
Rv2752c | 3065265 | c.927C>G | synonymous_variant | 0.23 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475280 | p.Val425Gly | missense_variant | 0.3 |
Rv3236c | 3612009 | p.Ala370Thr | missense_variant | 1.0 |
fbiB | 3641955 | p.Gly141Arg | missense_variant | 0.23 |
fbiB | 3642772 | p.Asp413Ala | missense_variant | 0.18 |
alr | 3840719 | c.702A>G | synonymous_variant | 1.0 |
rpoA | 3878238 | p.Asp90Glu | missense_variant | 0.15 |
rpoA | 3878641 | c.-135delG | upstream_gene_variant | 0.11 |
ddn | 3987013 | p.Gly57Ala | missense_variant | 0.23 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 0.99 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.41 |
embC | 4241456 | p.Ala532Pro | missense_variant | 0.42 |
embC | 4242476 | p.Pro872Ala | missense_variant | 0.21 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.22 |
embA | 4246423 | p.Val1064Gly | missense_variant | 0.26 |
ubiA | 4269529 | p.Ala102Gly | missense_variant | 0.21 |
ethA | 4327672 | c.-199G>A | upstream_gene_variant | 0.33 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |