Run ID: ERR1034665
Sample name:
Date: 31-03-2023 09:32:26
Number of reads: 2472471
Percentage reads mapped: 99.64
Strain: lineage4.8
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761110 | p.Asp435Val | missense_variant | 0.98 | rifampicin |
katG | 2155167 | p.Ser315Arg | missense_variant | 1.0 | isoniazid |
embB | 4247495 | p.Asp328Tyr | missense_variant | 1.0 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
rpoC | 762893 | c.-477C>T | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169320 | p.Leu431Phe | missense_variant | 0.36 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2746807 | c.792G>A | synonymous_variant | 1.0 |
thyX | 3067481 | c.465C>T | synonymous_variant | 1.0 |
thyA | 3073806 | c.666C>G | synonymous_variant | 0.33 |
rpoA | 3878641 | c.-135delG | upstream_gene_variant | 0.11 |
clpC1 | 4038857 | c.1848C>A | synonymous_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4249397 | p.Ala962Pro | missense_variant | 0.11 |
ubiA | 4269529 | p.Ala102Gly | missense_variant | 0.17 |
whiB6 | 4338464 | p.Asp20Tyr | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338614 | c.-93G>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |