lineage | Count |
---|---|
lineage4.1.2.1 | 12 |
lineage2.2.1 | 73 |
lineage4.1.1.3 | 13 |
lineage4.3.3 | 7 |
lineage4.8 | 2 |
lineage3.1.3 | 1 |
lineage4.3.4.2.1 | 4 |
lineage3 | 4 |
lineage6.3.1 | 1 |
lineage4.3.4.1 | 1 |
lineage6 | 1 |
lineage1.2.2.2 | 4 |
lineage2.2.1;lineage1.2.2.2 | 1 |
lineage4.4.2 | 5 |
lineage3.1.1 | 1 |
lineage4.2.1 | 2 |
lineage4.3.2 | 1 |
lineage2.2.1.1 | 2 |
lineage4 | 2 |
lineage4.1 | 3 |
lineage8 | 2 |
lineage4.1.4 | 1 |
lineage2.2.2 | 4 |
lineage4.2.2.2 | 4 |
lineage4.4.1.1 | 1 |
lineage4.5 | 4 |
lineage4.1.3 | 1 |
lineage4.1.1 | 4 |
lineage1.1.2 | 1 |
lineage4.3.4.2 | 2 |
lineage4.1.1.1 | 1 |
lineage4.8.1;lineage4.3.2.1 | 1 |
lineage4.4.2;lineage2.2.1 | 1 |
lineage4.3.2.1 | 1 |
spoligotype | Count |
---|---|
None | 168 |
ID | Drug resistance | Lineage | Country iso2 | SRR7341702 | HR-TB | lineage4.1.2.1 | ro | SRR7517820 | XDR-TB | lineage2.2.1 | None | SRR7516373 | HR-TB | lineage2.2.1 | None | SRR7516370 | HR-TB | lineage2.2.1 | None | SRR7516423 | Pre-XDR-TB | lineage2.2.1 | None | SRR7517690 | XDR-TB | lineage2.2.1 | None | SRR8651562 | Pre-XDR-TB | lineage2.2.1 | cn | DRR130058 | Pre-XDR-TB | lineage2.2.1 | None | DRR130057 | Pre-XDR-TB | lineage2.2.1 | None | DRR130168 | Pre-XDR-TB | lineage2.2.1 | None | DRR130167 | Pre-XDR-TB | lineage2.2.1 | None | DRR130169 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034639 | Pre-XDR-TB | lineage4.1.1.3 | None | DRR130166 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034603 | Pre-XDR-TB | lineage4.1.1.3 | pk | DRR130171 | Pre-XDR-TB | lineage2.2.1 | None | DRR130170 | Pre-XDR-TB | lineage2.2.1 | None | ERR067683 | HR-TB | lineage4.3.3 | ru | ERR4797831 | Pre-XDR-TB | lineage2.2.1 | in | ERR1034665 | MDR-TB | lineage4.8 | bg | ERR11044642 | MDR-TB | lineage3.1.3 | None | ERR3509859 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR4796473 | MDR-TB | lineage3 | in | ERR10680076 | MDR-TB | lineage6.3.1 | None | ERR3256203 | MDR-TB | lineage4.3.4.1 | ph | ERR3287826 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR3509860 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR3806631 | MDR-TB | lineage6 | None | ERR4797228 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797269 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799528 | Pre-XDR-TB | lineage1.2.2.2 | in | ERR4799898 | Pre-XDR-TB | lineage1.2.2.2 | in | ERR4800121 | RR-TB | lineage3 | None | ERR4799902 | MDR-TB | lineage2.2.1;lineage1.2.2.2 | None | ERR4811163 | Pre-XDR-TB | lineage4.4.2 | cn | ERR4809273 | MDR-TB | lineage4.1.1.3 | za | ERR5865012 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865019 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865014 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865015 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865018 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865016 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865013 | Pre-XDR-TB | lineage2.2.1 | None | ERR6362259 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR5865017 | Pre-XDR-TB | lineage2.2.1 | None | ERR688035 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR6397184 | MDR-TB | lineage3 | None | ERR6397203 | MDR-TB | lineage4.1.2.1 | None | ERR6362771 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR6397174 | MDR-TB | lineage4.1.2.1 | None | ERR7801134 | HR-TB | lineage4.3.3 | None | ERR7737934 | MDR-TB | lineage3.1.1 | None | ERR7801135 | HR-TB | lineage4.3.3 | None | ERR789239 | Pre-XDR-TB | lineage2.2.1 | None | ERR789238 | XDR-TB | lineage2.2.1 | None | ERR789236 | XDR-TB | lineage2.2.1 | None | ERR789235 | XDR-TB | lineage2.2.1 | None | ERR789237 | Pre-XDR-TB | lineage2.2.1 | None | ERR789234 | XDR-TB | lineage2.2.1 | None | ERR8773874 | Pre-XDR-TB | lineage4.3.3 | None | ERR8665768 | Pre-XDR-TB | lineage2.2.1 | None | ERR8773611 | MDR-TB | lineage2.2.1 | None | ERR7911259 | MDR-TB | lineage4.2.1 | md | ERR7911387 | Pre-XDR-TB | lineage2.2.1 | us | ERR8665770 | Pre-XDR-TB | lineage2.2.1 | None | ERR8773609 | MDR-TB | lineage2.2.1 | None | ERR8773876 | Pre-XDR-TB | lineage4.3.3 | None | ERR9907712 | MDR-TB | lineage4.3.2 | None | ERR8975781 | XDR-TB | lineage4.1.1.3 | None | ERR9119916 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9119915 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10305652 | MDR-TB | lineage2.2.1 | None | ERR11050149 | MDR-TB | lineage4.1.2.1 | None | SRR067508 | MDR-TB | lineage2.2.1.1 | None | SRR11567806 | Pre-XDR-TB | lineage2.2.1 | None | SRR1103591 | MDR-TB | lineage4 | None | SRR1162691 | MDR-TB | lineage4.1 | None | SRR11567805 | Pre-XDR-TB | lineage2.2.1 | None | SRR1162481 | MDR-TB | lineage4.1 | None | SRR1173725 | MDR-TB | lineage8 | None | SRR1173284 | MDR-TB | lineage8 | None | SRR11786865 | MDR-TB | lineage2.2.1 | None | SRR18714773 | Pre-XDR-TB | lineage2.2.1 | None | SRR13180240 | MDR-TB | lineage2.2.1 | None | SRR13870409 | Pre-XDR-TB | lineage4.1.4 | None | SRR16089395 | RR-TB | lineage2.2.1 | None | SRR16370530 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003043 | Pre-XDR-TB | lineage2.2.2 | None | SRR14088366 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR14088374 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR16156282 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR20969586 | MDR-TB | lineage2.2.1 | None | SRR18714896 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715415 | Pre-XDR-TB | lineage2.2.1 | None | SRR21576639 | MDR-TB | lineage2.2.1 | None | SRR21576621 | MDR-TB | lineage2.2.1 | None | SRR21576643 | MDR-TB | lineage2.2.1 | None | SRR21747032 | Pre-XDR-TB | lineage2.2.1 | None | SRR21576721 | MDR-TB | lineage2.2.1 | None | SRR21685367 | MDR-TB | lineage2.2.1 | None | SRR22424759 | Pre-XDR-TB | lineage2.2.1 | None | SRR21747046 | Pre-XDR-TB | lineage2.2.1 | None | SRR21747027 | Pre-XDR-TB | lineage2.2.1 | None | ERR11081055 | MDR-TB | lineage4.1.2.1 | None | ERR11069092 | MDR-TB | lineage4.1.2.1 | None | ERR10112853 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11081349 | MDR-TB | lineage2.2.1 | None | ERR8025725 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA2533365 | MDR-TB | lineage4.4.1.1 | uz | ERR10112889 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR21887741 | Pre-XDR-TB | lineage2.2.1 | None | SRR1723935 | MDR-TB | lineage4.5 | cn | SRR3105750 | MDR-TB | lineage1.2.2.2 | None | SAMEA2534002 | MDR-TB | lineage2.2.1 | uz | SAMN02231166 | MDR-TB | lineage4.1 | ml | ERR2099781 | Pre-XDR-TB | lineage4.1.2.1 | es | ERR1679586 | MDR-TB | lineage4.1.3 | ng | SRR2024991 | Pre-XDR-TB | lineage2.2.1.1 | cn | ERR4812984 | MDR-TB | lineage4.1.1 | pe | ERR4813215 | Pre-XDR-TB | lineage4.3.3 | None | SRR2024988 | Pre-XDR-TB | lineage2.2.1 | cn | ERR1952142 | MDR-TB | lineage1.1.2 | ie | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR2229462 | Other | lineage4.8 | None | ERR2099776 | MDR-TB | lineage4.1.2.1 | es | ERR2510400 | Pre-XDR-TB | lineage4.2.2.2 | pk | ERR2099777 | MDR-TB | lineage4.1.2.1 | es | ERR2099782 | Pre-XDR-TB | lineage4.1.2.1 | es | SRR5153719 | Pre-XDR-TB | lineage4.2.1 | None | ERR2510419 | Pre-XDR-TB | lineage4.2.2.2 | pk | SRR1723751 | Pre-XDR-TB | lineage2.2.1 | cn | ERR2179644 | RR-TB | lineage4.4.2 | cn | ERR2516463 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR2516478 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR553002 | MDR-TB | lineage4.1.1.1 | sz | ERR2179654 | MDR-TB | lineage4.5 | cn | SRR5341281 | Pre-XDR-TB | lineage1.2.2.2 | in | ERR2516693 | Pre-XDR-TB | lineage4.1.1 | pe | ERR2516459 | MDR-TB | lineage2.2.1 | nl | SAMEA2534179 | MDR-TB | lineage2.2.1 | uz | ERR2517062 | MDR-TB | lineage4.3.4.2.1 | gb | ERR2516808 | MDR-TB | lineage4.3.4.2.1 | gb | SRR5486880 | RR-TB | lineage4.3.3 | None | SRR1723976 | RR-TB | lineage4.4.2 | cn | SRR5709923 | MDR-TB | lineage2.2.1 | th | SRR5535715 | HR-TB | lineage2.2.1 | None | ERR2706941 | RR-TB | lineage4 | cd | SRR5709921 | MDR-TB | lineage2.2.1 | th | SRR5709759 | Pre-XDR-TB | lineage2.2.2 | th | ERR4831097 | Pre-XDR-TB | lineage2.2.1 | None | SRR5709960 | Pre-XDR-TB | lineage2.2.2 | th | SRR5709803 | Pre-XDR-TB | lineage2.2.2 | th | ERR4830486 | MDR-TB | lineage4.1.1 | za | ERR2099783 | Pre-XDR-TB | lineage4.1.2.1 | es | ERR4829063 | MDR-TB | lineage4.1.2.1 | ng | ERR4831469 | MDR-TB | lineage3 | None | SRR6824330 | MDR-TB | lineage4.5 | cn | SRR671767 | MDR-TB | lineage4.5 | cn | SRR6982173 | Other | lineage4.8.1;lineage4.3.2.1 | None | SRR6824347 | RR-TB | lineage4.4.2 | cn | SRR6824563 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6824671 | RR-TB | lineage4.4.2;lineage2.2.1 | cn | SRR6824708 | MDR-TB | lineage2.2.1 | cn | ERR502959 | RR-TB | lineage4.4.2 | None | SRR6982362 | Other | lineage4.3.2.1 | None | ERR3132175 | Pre-XDR-TB | lineage2.2.1 | None | ERR3132179 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971252 | MDR-TB | lineage4.1.1 | None |
---|