Run ID: ERR10969120
Sample name:
Date: 31-03-2023 11:22:35
Number of reads: 1878772
Percentage reads mapped: 99.61
Strain: lineage4.3.4.1;lineage4.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 0.51 |
lineage4.1 | Euro-American | T;X;H | None | 0.47 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 0.49 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 | 0.56 |
lineage4.3.4.1 | Euro-American (LAM) | LAM1;LAM2 | RD174 | 0.53 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576456 | p.Val370Gly | missense_variant | 0.4 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 0.53 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 0.42 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
inhA | 1673368 | c.-834A>G | upstream_gene_variant | 0.49 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.26 |
Rv1979c | 2222854 | p.Ile104Thr | missense_variant | 0.57 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ahpC | 2726210 | c.18T>C | synonymous_variant | 0.52 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.3 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 0.48 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087816 | p.Cys333Gly | missense_variant | 0.12 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.62 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612009 | p.Ala370Thr | missense_variant | 0.61 |
fbiA | 3641447 | p.Thr302Met | missense_variant | 0.31 |
rpoA | 3877553 | p.Glu319Lys | missense_variant | 0.33 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 0.49 |
clpC1 | 4039991 | c.714G>A | synonymous_variant | 0.38 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.24 |
embC | 4240897 | c.1035C>G | synonymous_variant | 0.38 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 0.42 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.25 |
embB | 4249408 | c.2895G>A | synonymous_variant | 0.63 |
aftB | 4268619 | p.Val73Gly | missense_variant | 0.2 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 0.6 |