Run ID: ERR11044908
Sample name:
Date: 31-03-2023 12:02:36
Number of reads: 379433
Percentage reads mapped: 99.52
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5370 | p.His44Arg | missense_variant | 0.11 |
gyrB | 6200 | p.Arg321Cys | missense_variant | 0.29 |
gyrB | 6683 | p.Arg482Ser | missense_variant | 0.4 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490718 | c.-65G>A | upstream_gene_variant | 0.22 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575575 | c.228G>A | synonymous_variant | 0.14 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
mshA | 576456 | p.Val370Gly | missense_variant | 0.67 |
ccsA | 620300 | p.Leu137Arg | missense_variant | 0.29 |
rpoB | 759935 | p.Glu43Asp | missense_variant | 0.12 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoB | 761087 | c.1281C>A | synonymous_variant | 0.23 |
rpoB | 761482 | p.Ala559Gly | missense_variant | 0.22 |
rpoC | 762800 | c.-570C>T | upstream_gene_variant | 0.4 |
rpoB | 762801 | p.Asp999Asn | missense_variant | 0.33 |
rpoC | 764534 | p.Arg389Gly | missense_variant | 0.4 |
rpoC | 764963 | p.Phe532Ile | missense_variant | 0.12 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777082 | p.Lys467Glu | missense_variant | 0.22 |
mmpL5 | 778191 | p.Gly97Asp | missense_variant | 0.14 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303025 | p.Arg32Leu | missense_variant | 0.15 |
fbiC | 1303963 | p.Ala345Thr | missense_variant | 0.4 |
Rv1258c | 1407369 | c.-29G>A | upstream_gene_variant | 0.25 |
atpE | 1461104 | c.60C>G | synonymous_variant | 0.25 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473624 | n.-34T>G | upstream_gene_variant | 0.2 |
rrl | 1474635 | n.978C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475549 | n.1892T>A | non_coding_transcript_exon_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918621 | p.Ser228Arg | missense_variant | 0.33 |
ndh | 2102453 | p.Leu197* | stop_gained | 0.29 |
katG | 2155876 | p.Asp79Gly | missense_variant | 0.4 |
katG | 2156027 | p.Pro29Ser | missense_variant | 0.25 |
PPE35 | 2167675 | p.Leu980Val | missense_variant | 0.29 |
PPE35 | 2167792 | p.Ser941Pro | missense_variant | 0.25 |
PPE35 | 2169692 | c.921C>T | synonymous_variant | 0.25 |
Rv1979c | 2223052 | p.Glu38Ala | missense_variant | 0.22 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
kasA | 2518318 | c.204C>T | synonymous_variant | 0.29 |
ahpC | 2726397 | p.Ser69Gly | missense_variant | 0.18 |
folC | 2746528 | c.1071C>G | synonymous_variant | 0.25 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087785 | c.966C>T | synonymous_variant | 0.29 |
Rv3083 | 3448387 | c.-117C>G | upstream_gene_variant | 0.14 |
Rv3083 | 3448651 | p.Tyr50Asp | missense_variant | 0.14 |
Rv3083 | 3448992 | c.489C>T | synonymous_variant | 0.2 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568833 | c.-154C>T | upstream_gene_variant | 0.22 |
Rv3236c | 3612773 | p.Gly115Asp | missense_variant | 1.0 |
fbiB | 3640588 | c.-947C>T | upstream_gene_variant | 0.15 |
alr | 3841137 | p.Asp95Val | missense_variant | 0.29 |
ddn | 3987196 | p.Glu118Ala | missense_variant | 0.15 |
clpC1 | 4038895 | p.Tyr604Asp | missense_variant | 0.18 |
clpC1 | 4039408 | c.1297C>A | synonymous_variant | 0.15 |
embC | 4240411 | c.549G>A | synonymous_variant | 0.4 |
embC | 4241174 | p.Ser438Thr | missense_variant | 0.12 |
embC | 4241425 | c.1563G>A | synonymous_variant | 0.25 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embC | 4243121 | p.Ser1087Arg | missense_variant | 0.15 |
embA | 4245778 | p.Ala849Val | missense_variant | 0.18 |
embA | 4246480 | p.Gly1083Asp | missense_variant | 0.22 |
embB | 4247068 | c.555T>C | synonymous_variant | 1.0 |
embB | 4247948 | p.Val479Met | missense_variant | 1.0 |
embB | 4248409 | p.Leu632Phe | missense_variant | 0.29 |
aftB | 4268453 | c.384G>C | synonymous_variant | 0.2 |
aftB | 4268619 | p.Val73Gly | missense_variant | 0.38 |
ubiA | 4269022 | p.Ala271Val | missense_variant | 0.12 |
ethA | 4326975 | p.Trp167Arg | missense_variant | 0.1 |
ethA | 4328415 | c.-942A>G | upstream_gene_variant | 0.25 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |