Run ID: ERR11049021
Sample name:
Date: 31-03-2023 12:03:52
Number of reads: 3847368
Percentage reads mapped: 99.69
Strain: lineage4.7
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.7 | Euro-American (mainly T) | T1;T5 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.16 |
rpoB | 760715 | c.909C>T | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775878 | p.Thr868Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1416814 | c.534G>A | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474294 | n.637C>G | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2167963 | p.Gly884Trp | missense_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.25 |
PPE35 | 2170675 | c.-63G>C | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.2 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.67 |
fbiD | 3339746 | p.Ala210Gly | missense_variant | 0.36 |
whiB7 | 3568428 | c.252A>G | synonymous_variant | 0.29 |
rpoA | 3878613 | c.-106A>C | upstream_gene_variant | 0.22 |
rpoA | 3878618 | c.-111A>C | upstream_gene_variant | 0.3 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.47 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.13 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4249732 | c.3219C>G | synonymous_variant | 1.0 |
ubiA | 4270004 | c.-171G>A | upstream_gene_variant | 0.99 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |