Run ID: ERR11050751
Sample name:
Date: 03-04-2023 19:23:45
Number of reads: 2817741
Percentage reads mapped: 99.53
Strain: lineage4.5
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6878 | c.-424T>C | upstream_gene_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7892 | c.591G>A | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.21 |
mshA | 576442 | p.Cys365Trp | missense_variant | 0.2 |
mshA | 576613 | c.1266A>C | synonymous_variant | 0.24 |
mshA | 576616 | c.1269G>C | synonymous_variant | 0.14 |
ccsA | 620029 | c.139C>T | synonymous_variant | 1.0 |
rpoC | 764367 | p.Gly333Ala | missense_variant | 0.22 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777883 | p.Gly200Arg | missense_variant | 0.39 |
mmpL5 | 778422 | c.58delG | frameshift_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406101 | p.Pro414Ser | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.33 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102656 | c.387C>T | synonymous_variant | 1.0 |
katG | 2156417 | c.-306T>C | upstream_gene_variant | 1.0 |
PPE35 | 2170037 | c.576C>G | synonymous_variant | 0.14 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.25 |
PPE35 | 2170568 | p.Ile15Met | missense_variant | 1.0 |
Rv1979c | 2222124 | c.1041C>T | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.25 |
ald | 3087816 | p.Cys333Gly | missense_variant | 0.13 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.55 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568425 | c.255T>C | synonymous_variant | 0.25 |
whiB7 | 3568428 | c.252A>G | synonymous_variant | 0.25 |
whiB7 | 3568431 | p.Arg83Gly | missense_variant | 0.21 |
rpoA | 3878575 | c.-68C>T | upstream_gene_variant | 1.0 |
rpoA | 3878597 | c.-90G>C | upstream_gene_variant | 0.19 |
rpoA | 3878613 | c.-106A>C | upstream_gene_variant | 0.4 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.78 |
clpC1 | 4038318 | p.Pro796Leu | missense_variant | 1.0 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.12 |
embC | 4242528 | p.Gly889Ala | missense_variant | 0.14 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.38 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.17 |
embB | 4247020 | c.507C>G | synonymous_variant | 0.17 |
embB | 4247033 | p.Ser174Arg | missense_variant | 0.25 |
embB | 4248328 | c.1815G>C | synonymous_variant | 0.15 |
aftB | 4267981 | p.Arg286Gly | missense_variant | 0.23 |
whiB6 | 4338200 | p.Asp108His | missense_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |