Run ID: ERR11050782
Sample name:
Date: 03-04-2023 20:52:36
Number of reads: 3006904
Percentage reads mapped: 99.53
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 0.99 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
mshA | 576113 | p.Arg256Gly | missense_variant | 0.26 |
mshA | 576442 | p.Cys365Trp | missense_variant | 0.35 |
mshA | 576489 | p.Val381Gly | missense_variant | 0.27 |
mshA | 576613 | c.1266A>C | synonymous_variant | 0.19 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 764367 | p.Gly333Ala | missense_variant | 0.16 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777883 | p.Gly200Arg | missense_variant | 0.29 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1476058 | n.2401T>G | non_coding_transcript_exon_variant | 0.16 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.31 |
tlyA | 1917795 | c.-145G>C | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169041 | c.1572G>A | synonymous_variant | 0.32 |
PPE35 | 2169044 | c.1569G>C | synonymous_variant | 0.43 |
PPE35 | 2169047 | p.Ile522Val | missense_variant | 0.33 |
PPE35 | 2169053 | c.1560T>C | synonymous_variant | 1.0 |
PPE35 | 2169056 | c.1557A>G | synonymous_variant | 0.33 |
PPE35 | 2169059 | c.1554G>A | synonymous_variant | 0.67 |
PPE35 | 2169063 | p.Met517Thr | missense_variant | 1.0 |
PPE35 | 2169065 | p.Ala516Ile | missense_variant | 0.67 |
PPE35 | 2169068 | c.1545G>T | synonymous_variant | 0.68 |
PPE35 | 2169071 | c.1542A>G | synonymous_variant | 0.27 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.27 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.33 |
eis | 2714619 | c.714C>T | synonymous_variant | 1.0 |
Rv2752c | 3064823 | p.Val457Leu | missense_variant | 0.17 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087494 | c.675C>T | synonymous_variant | 1.0 |
ald | 3087816 | p.Cys333Gly | missense_variant | 0.2 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.75 |
Rv3083 | 3449273 | p.Ala257Val | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568425 | c.255T>C | synonymous_variant | 0.38 |
whiB7 | 3568428 | c.252A>G | synonymous_variant | 0.33 |
whiB7 | 3568431 | c.249C>G | synonymous_variant | 0.29 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.67 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.27 |
embC | 4240427 | p.Ser189Cys | missense_variant | 0.23 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.35 |
embB | 4247016 | p.Ser168Trp | missense_variant | 0.21 |
embB | 4247020 | c.507C>G | synonymous_variant | 0.18 |
embB | 4247033 | p.Ser174Arg | missense_variant | 0.19 |
embB | 4248328 | c.1815G>C | synonymous_variant | 0.21 |
whiB6 | 4338200 | p.Asp108His | missense_variant | 0.24 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |