Run ID: ERR1198990
Sample name:
Date: 14-08-2022 01:42:00
Number of reads: 10798086
Percentage reads mapped: 95.66
Strain: lineage4.6.1.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
lineage4.6.1 | Euro-American (Uganda) | T2 | RD724 | 1.0 |
lineage4.6.1.1 | Euro-American | T2-Uganda | RD724 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472644 | n.799C>T | non_coding_transcript_exon_variant | 0.14 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7539 | p.Thr80Ala | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.09 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1473870 | n.213G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1473876 | n.219G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474467 | n.810A>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474905 | n.1248T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475699 | n.2042C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475722 | n.2065G>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475869 | n.2212C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475937 | n.2280A>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476429 | n.2772A>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169320 | p.Leu431Phe | missense_variant | 0.18 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.22 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ribD | 2987307 | p.Ala157Pro | missense_variant | 0.14 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
clpC1 | 4038857 | c.1848C>A | synonymous_variant | 0.14 |
embC | 4242425 | p.Arg855Gly | missense_variant | 0.15 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
ethA | 4328329 | c.-856C>G | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |