Run ID: ERR1199057
Sample name:
Date: 14-08-2022 01:33:24
Number of reads: 6241528
Percentage reads mapped: 90.08
Strain: lineage4.6.1.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
lineage4.6.1 | Euro-American (Uganda) | T2 | RD724 | 0.99 |
lineage4.6.1.1 | Euro-American | T2-Uganda | RD724 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.27 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7539 | p.Thr80Ala | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.98 |
fgd1 | 491313 | c.531C>A | synonymous_variant | 0.36 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472380 | n.535G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 0.28 |
rrs | 1473199 | n.1356delA | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474218 | n.561T>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474228 | n.571T>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1475552 | n.1895G>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475574 | n.1917C>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.42 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475855 | n.2198A>G | non_coding_transcript_exon_variant | 0.46 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475866 | n.2209T>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154339 | c.1773A>C | synonymous_variant | 0.96 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ribD | 2986821 | c.-18C>T | upstream_gene_variant | 0.91 |
ribD | 2987307 | p.Ala157Pro | missense_variant | 0.14 |
Rv2752c | 3065279 | p.Thr305Ala | missense_variant | 0.93 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
alr | 3840262 | p.His387Tyr | missense_variant | 0.95 |
clpC1 | 4039363 | p.Ala448Pro | missense_variant | 0.24 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245092 | c.1860C>T | synonymous_variant | 0.96 |
ethA | 4328329 | c.-856C>G | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |