Run ID: ERR1200605
Sample name:
Date: 13-08-2022 02:36:58
Number of reads: 8031081
Percentage reads mapped: 98.62
Strain: lineage4.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.2 | Euro-American | H;T;LAM | None | 1.0 |
lineage4.2.1 | Euro-American (TUR) | H3;H4 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
ethA | 4327054 | p.Tyr140* | stop_gained | 0.13 | ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6352 | c.-950C>G | upstream_gene_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7799 | c.498A>C | synonymous_variant | 0.13 |
gyrA | 8377 | p.Asp359Gly | missense_variant | 0.21 |
gyrA | 8445 | p.Arg382Gly | missense_variant | 0.21 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 575309 | c.-39C>G | upstream_gene_variant | 0.27 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.33 |
rpoC | 764751 | p.Val461Gly | missense_variant | 0.26 |
rpoC | 764905 | p.Phe512Leu | missense_variant | 0.17 |
rpoC | 767305 | p.Tyr1312* | stop_gained | 0.2 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406153 | c.1188G>A | synonymous_variant | 1.0 |
embR | 1417136 | p.Ser71Ile | missense_variant | 0.21 |
rrs | 1471658 | n.-188T>G | upstream_gene_variant | 0.19 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473360 | n.1515T>G | non_coding_transcript_exon_variant | 0.3 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102891 | p.Phe51Ser | missense_variant | 0.16 |
PPE35 | 2167871 | c.2742G>C | synonymous_variant | 0.13 |
PPE35 | 2169379 | p.Phe412Val | missense_variant | 0.23 |
PPE35 | 2169879 | p.Phe245Cys | missense_variant | 1.0 |
PPE35 | 2170748 | c.-136C>T | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2290023 | c.-782A>C | upstream_gene_variant | 0.34 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.24 |
eis | 2715438 | c.-106T>G | upstream_gene_variant | 1.0 |
ahpC | 2726737 | p.Asp182Ala | missense_variant | 0.21 |
ahpC | 2726756 | c.564C>G | synonymous_variant | 0.22 |
folC | 2746186 | c.1413G>C | synonymous_variant | 0.19 |
ribD | 2987392 | p.Arg185Pro | missense_variant | 0.17 |
Rv2752c | 3064552 | p.Arg547Pro | missense_variant | 0.13 |
Rv2752c | 3064741 | p.Gly484Ala | missense_variant | 0.24 |
Rv2752c | 3065265 | c.927C>G | synonymous_variant | 0.21 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339550 | p.Gly145Trp | missense_variant | 0.14 |
Rv3083 | 3449058 | p.Ser185Arg | missense_variant | 0.24 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474601 | p.Arg199Gly | missense_variant | 0.17 |
fprA | 3475280 | p.Val425Gly | missense_variant | 0.29 |
fbiB | 3641955 | p.Gly141Arg | missense_variant | 0.17 |
alr | 3840268 | p.Thr385Pro | missense_variant | 0.2 |
rpoA | 3878641 | c.-135delG | upstream_gene_variant | 0.27 |
clpC1 | 4039363 | p.Ala448Pro | missense_variant | 0.21 |
clpC1 | 4039618 | c.1087C>A | synonymous_variant | 1.0 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.42 |
embC | 4241056 | c.1194C>G | synonymous_variant | 0.21 |
embC | 4241978 | p.Ser706Ala | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.15 |
embA | 4243977 | p.Ala249Pro | missense_variant | 0.35 |
embA | 4244375 | c.1143C>G | synonymous_variant | 0.29 |
embB | 4248725 | p.Ser738Ala | missense_variant | 0.16 |
ethA | 4327672 | c.-199G>A | upstream_gene_variant | 0.16 |
whiB6 | 4338593 | c.-73delT | upstream_gene_variant | 1.0 |
whiB6 | 4338596 | c.-75G>C | upstream_gene_variant | 1.0 |
gid | 4407913 | p.Arg97Leu | missense_variant | 1.0 |
gid | 4408036 | p.Gly56Val | missense_variant | 1.0 |