Run ID: ERR1679645
Sample name:
Date: 31-03-2023 14:55:25
Number of reads: 748098
Percentage reads mapped: 99.67
Strain: lineage4.6.2.2
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
lineage4.6.2 | Euro-American | T;LAM | RD726 | 1.0 |
lineage4.6.2.2 | Euro-American (Cameroon) | LAM10-CAM | RD726 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gid | 4407796 | p.Ser136* | stop_gained | 0.11 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776031 | p.Gly817Glu | missense_variant | 0.1 |
mmpR5 | 778298 | c.-692C>T | upstream_gene_variant | 1.0 |
mmpL5 | 778678 | c.-198C>T | upstream_gene_variant | 0.12 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1407375 | c.-36delC | upstream_gene_variant | 0.18 |
Rv1258c | 1407524 | c.-184A>T | upstream_gene_variant | 0.11 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1476306 | n.2649A>G | non_coding_transcript_exon_variant | 0.1 |
inhA | 1674823 | p.Gly208Ser | missense_variant | 0.1 |
rpsA | 1834869 | p.Arg443His | missense_variant | 0.11 |
rpsA | 1834908 | p.Ser456Leu | missense_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102204 | c.838dupG | frameshift_variant | 0.18 |
katG | 2155541 | p.Trp191Gly | missense_variant | 1.0 |
PPE35 | 2169509 | c.1104T>C | synonymous_variant | 0.1 |
Rv1979c | 2221746 | c.1416_1418dupCCG | disruptive_inframe_insertion | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518226 | p.Ala38Thr | missense_variant | 0.1 |
kasA | 2518619 | p.Ser169Thr | missense_variant | 0.18 |
eis | 2715344 | c.-12C>A | upstream_gene_variant | 0.1 |
thyX | 3067474 | p.Pro158Ala | missense_variant | 1.0 |
ald | 3087034 | c.216delC | frameshift_variant | 0.12 |
ald | 3087494 | c.675C>G | synonymous_variant | 0.11 |
Rv3083 | 3448567 | p.His22Asp | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612571 | c.546C>T | synonymous_variant | 1.0 |
fbiB | 3641555 | c.21C>T | synonymous_variant | 0.14 |
alr | 3840966 | p.Ala152Val | missense_variant | 0.1 |
alr | 3841594 | c.-174T>C | upstream_gene_variant | 1.0 |
rpoA | 3878658 | c.-151A>G | upstream_gene_variant | 0.25 |
embA | 4242550 | c.-683C>G | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243724 | c.492G>A | synonymous_variant | 0.11 |
aftB | 4267272 | p.Lys522Arg | missense_variant | 1.0 |
ethR | 4326739 | c.-810G>C | upstream_gene_variant | 1.0 |
ethA | 4327560 | c.-87G>T | upstream_gene_variant | 0.1 |
ethA | 4328004 | c.-531C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407980 | p.Pro75Ser | missense_variant | 1.0 |