TB-Profiler result

Run: ERR212025
Summary

Run ID: ERR212025

Sample name:

Date: 31-03-2023 15:45:00

Number of reads: 4269237

Percentage reads mapped: 99.63

Strain: lineage4.9

Drug-resistance: HR-TB

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
ahpC 2726141 c.-52C>T upstream_gene_variant 0.98 isoniazid
katG 2118619 c.-2233_*35269del transcript_ablation 1.0 isoniazid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 0.99
fbiC 1303104 c.174G>T synonymous_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
ahpC 2726338 p.Val49Gly missense_variant 0.34
folC 2746333 c.1266C>T synonymous_variant 1.0
rpoA 3877536 c.972C>T synonymous_variant 1.0
clpC1 4038857 c.1848C>A synonymous_variant 0.33
embC 4242425 p.Arg855Gly missense_variant 0.25
whiB6 4338595 c.-75delG upstream_gene_variant 1.0