Rv2428 - c.-52C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
106 HR-TB
424 MDR-TB
123 Pre-XDR-TB
10 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.3 | 149 |
| lineage2.2.1 | 192 |
| lineage4.4.1.1 | 5 |
| lineage4.3.4.2.1 | 66 |
| lineage4.3.4.2 | 4 |
| lineage4.8 | 17 |
| lineage4.5 | 15 |
| lineage4.6.2.2 | 10 |
| lineage4.7 | 8 |
| lineage2.2.1;lineage4.2.1.1 | 1 |
| lineage4.3.2 | 3 |
| lineage1.1.1 | 3 |
| lineage4.9 | 3 |
| lineage2.2.1;lineage4 | 3 |
| lineage4.9.1 | 1 |
| lineage2.2.1.1 | 11 |
| lineage4.1.2.1 | 37 |
| lineage4.6.1.2 | 4 |
| lineage4.4.2 | 17 |
| lineage4.3.4.1 | 1 |
| lineage4.2.1 | 17 |
| lineage4.2.2 | 12 |
| lineage1.1.3.1 | 3 |
| lineage6.2.2 | 4 |
| lineage4.1 | 2 |
| lineage4.2.2.2 | 14 |
| lineage2.2.1;lineage4.2.1 | 2 |
| lineage4.1.2 | 6 |
| lineage2.2.1;lineage4.3.4.2.1 | 1 |
| lineage4 | 6 |
| lineage4.1.1.1 | 1 |
| lineage4.1.1.3 | 3 |
| lineage2.2.2 | 4 |
| lineage5.1.1 | 4 |
| lineage4.1.1 | 5 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage6.2.3 | 1 |
| lineage1.2.1.2.1 | 3 |
| lineage4.6.1.1 | 4 |
| lineage1.1.2 | 5 |
| lineage2.1;lineage2.2.1 | 1 |
| lineage4.2.1.1 | 1 |
| lineage1.2.2.2 | 2 |
| lineage4.3.1 | 1 |
| lineage5.1 | 2 |
| lineage4.1.2.1;lineage4.3.4.2.1 | 1 |
| lineage4.1.3 | 1 |
| lineage4.3 | 1 |
| lineage2.2.1.2 | 2 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage2.1 | 1 |
| lineage2.2.1;lineage4.3.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 663 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1175351 | MDR-TB | lineage4.3.3 | None | SRR9971195 | MDR-TB | lineage4.3.3 | None | DRR130199 | Pre-XDR-TB | lineage2.2.1 | None | SRR29341463 | HR-TB | lineage4.4.1.1 | None | SRR1184319 | MDR-TB | lineage4.3.3 | None | ERR11488452 | MDR-TB | lineage4.3.4.2.1 | None | SRR28394181 | HR-TB | lineage4.3.4.2 | None | ERR11080964 | MDR-TB | lineage4.8 | None | SRR27069422 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488449 | MDR-TB | lineage4.3.4.2.1 | None | SRR10040422 | MDR-TB | lineage2.2.1 | None | ERR15686468 | Pre-XDR-TB | lineage4.5 | None | SRR29385487 | HR-TB | lineage2.2.1 | None | ERR11489046 | MDR-TB | lineage2.2.1 | None | ERR4796599 | Pre-XDR-TB | lineage2.2.1 | in | SRR1180396 | MDR-TB | lineage2.2.1 | None | ERR8773874 | Pre-XDR-TB | lineage4.3.3 | None | SRR833067 | MDR-TB | lineage4.3.3 | None | ERR4872149 | MDR-TB | lineage4.6.2.2 | None | ERR6358850 | MDR-TB | lineage4.7 | None | ERR13273279 | MDR-TB | lineage2.2.1;lineage4.2.1.1 | None | SRR29053131 | MDR-TB | lineage4.3.3 | None | ERR2984798 | MDR-TB | lineage4.3.2 | None | ERR11488845 | MDR-TB | lineage4.3.4.2.1 | None | ERR11489032 | MDR-TB | lineage2.2.1 | None | SRR20632818 | Pre-XDR-TB | lineage2.2.1 | None | SRR26937120 | MDR-TB | lineage1.1.1 | None | SRR25207072 | MDR-TB | lineage2.2.1 | None | SAMN01925669 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02398702 | Pre-XDR-TB | lineage2.2.1 | kr | SRR15364434 | Pre-XDR-TB | lineage4.9 | None | SRR25827638 | Pre-XDR-TB | lineage2.2.1;lineage4 | None | ERR3509850 | MDR-TB | lineage4.3.4.2.1 | None | SAMN02350460 | MDR-TB | lineage4.3.3 | za | ERR11489062 | MDR-TB | lineage4.3.4.2.1 | None | ERR11775060 | MDR-TB | lineage4.9.1 | None | SRR671758 | MDR-TB | lineage2.2.1.1 | cn | SRR671784 | Pre-XDR-TB | lineage2.2.1 | cn | SRR13583465 | HR-TB | lineage4.1.2.1 | None | SRR671837 | MDR-TB | lineage2.2.1 | cn | SRR29231820 | MDR-TB | lineage4.6.1.2 | None | ERR11489028 | Pre-XDR-TB | lineage4.3.4.2.1 | None | SRR6824484 | XDR-TB | lineage4.4.2 | cn | SAMN02586014 | MDR-TB | lineage4.3.3 | za | SAMN02350440 | Pre-XDR-TB | lineage4.3.3 | za | SRR16097540 | HR-TB | lineage2.2.1 | None | ERR718313 | MDR-TB | lineage2.2.1 | th | ERR3287746 | HR-TB | lineage4.3.4.1 | pe | SRR28240166 | HR-TB | lineage4.8 | None | ERR11773737 | Pre-XDR-TB | lineage4.3.3 | None | SRR1019162 | Pre-XDR-TB | lineage4.3.3 | None | ERR11252569 | MDR-TB | lineage2.2.1 | None | SRR28351295 | HR-TB | lineage2.2.1 | None | SRR6831772 | MDR-TB | lineage4.2.1 | None | ERR5918044 | MDR-TB | lineage2.2.1 | za | ERR7911136 | MDR-TB | lineage2.2.1 | vn | SRR833106 | MDR-TB | lineage4.3.3 | None | ERR4810981 | Pre-XDR-TB | lineage2.2.1 | cn | SRR2024922 | Pre-XDR-TB | lineage2.2.1 | cn | SRR9971358 | MDR-TB | lineage2.2.1 | None | ERR4811325 | Pre-XDR-TB | lineage4.2.2 | cn | ERR2706916 | MDR-TB | lineage4.6.1.2 | cd | ERR7911496 | MDR-TB | lineage1.1.1 | vn | ERR4811475 | HR-TB | lineage2.2.1 | cn | ERR7911073 | Pre-XDR-TB | lineage4.3.3 | za | ERR4829116 | HR-TB | lineage4.2.1 | it | SRR9971173 | MDR-TB | lineage4.3.3 | None | ERR8975795 | MDR-TB | lineage2.2.1 | None | SAMN02350420 | MDR-TB | lineage4.3.3 | za | SRR11342637 | MDR-TB | lineage4.3.3 | None | SRR12420341 | Pre-XDR-TB | lineage2.2.1 | None | SRR13583355 | HR-TB | lineage4.1.2.1 | None | SRR14782218 | HR-TB | lineage4.1.2.1 | None | SRR15465766 | MDR-TB | lineage1.1.3.1 | None | ERR550722 | HR-TB | lineage4.1.2.1 | de | ERR553062 | HR-TB | lineage4.1.2.1 | de | ERR553000 | MDR-TB | lineage6.2.2 | None | ERR2516920 | MDR-TB | lineage4.1.2.1 | gb | ERR2516498 | MDR-TB | lineage4.3.3 | nl | ERR2516555 | MDR-TB | lineage4.1 | nl | ERR2516464 | MDR-TB | lineage4.1.2.1 | pe | ERR2516422 | MDR-TB | lineage4.7 | pe | ERR4818502 | HR-TB | lineage4.2.2.2 | gb | ERR234577 | HR-TB | lineage4.2.1 | ru | SRR6824667 | Pre-XDR-TB | lineage4.4.2 | cn | SRR1011483 | Pre-XDR-TB | lineage4.3.3 | None | ERR221556 | HR-TB | lineage4.3.4.2.1 | mw | SRR6832386 | HR-TB | lineage4.2.1 | None | SRR6832857 | HR-TB | lineage2.2.1;lineage4.2.1 | None | SRR18714952 | MDR-TB | lineage4.2.1 | None | ERR1035100 | Pre-XDR-TB | lineage2.2.1.1 | vn | SRR29539613 | HR-TB | lineage4.2.1 | None | SRR1723918 | MDR-TB | lineage4.5 | None | SAMN02053746 | MDR-TB | lineage4.3.3 | za | ERR11488384 | MDR-TB | lineage2.2.1 | None | ERR11488575 | Pre-XDR-TB | lineage4.3.4.2.1 | None | SRR27241220 | MDR-TB | lineage2.2.1 | None | SAMN02350477 | MDR-TB | lineage4.3.3 | za | ERR158584 | HR-TB | lineage4.3.3 | ru | ERR11488655 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488365 | MDR-TB | lineage2.2.1 | None | ERR13249162 | HR-TB | lineage2.2.1 | None | ERR3794501 | MDR-TB | lineage2.2.1 | None | SAMN03246632 | MDR-TB | lineage4.5 | cn | SRR23310824 | MDR-TB | lineage2.2.1 | None | ERR11488676 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488782 | MDR-TB | lineage4.3.4.2.1 | None | ERR2179776 | HR-TB | lineage4.5 | cn | SRR26937001 | MDR-TB | lineage2.2.1 | None | ERR10680176 | MDR-TB | lineage4.1.2.1 | None | ERR10680203 | MDR-TB | lineage6.2.2 | None | SRR14782219 | HR-TB | lineage4.1.2.1 | None | SRR27107235 | HR-TB | lineage4.1.2.1 | None | SRR25207357 | Pre-XDR-TB | lineage4.2.2 | None | SRR15316341 | MDR-TB | lineage4.5 | None | SAMN02586097 | MDR-TB | lineage4.3.3 | za | SRR11662306 | MDR-TB | lineage2.2.1 | None | DRR188784 | HR-TB | lineage2.2.1 | None | ERR11488768 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR11488356 | MDR-TB | lineage2.2.1 | None | ERR10748418 | MDR-TB | lineage2.2.1 | None | ERR4822360 | MDR-TB | lineage2.2.1 | None | ERR3509849 | HR-TB | lineage4.3.4.2.1 | None | ERR4872065 | MDR-TB | lineage4.1.2 | None | ERR11488553 | Pre-XDR-TB | lineage4.3.4.2.1 | None | SRR10305776 | HR-TB | lineage2.2.1 | None | SRR1172858 | MDR-TB | lineage4.3.3 | None | ERR2516069 | MDR-TB | lineage4.3.3 | za | ERR11488370 | MDR-TB | lineage4.3.4.2.1 | None | ERR8976013 | MDR-TB | lineage4.3.3 | None | SRR924224 | Pre-XDR-TB | lineage4.3.3 | None | ERR4872179 | MDR-TB | lineage4.6.2.2 | None | SRR1047988 | Pre-XDR-TB | lineage2.2.1 | None | SRR1165277 | MDR-TB | lineage4.3.3 | None | SRR18714845 | HR-TB | lineage2.2.1 | None | ERR11043389 | MDR-TB | lineage4.7 | None | SAMN01925657 | Pre-XDR-TB | lineage4.3.3 | None | SRR11567796 | Pre-XDR-TB | lineage2.2.1 | None | SRR11567786 | Pre-XDR-TB | lineage2.2.1 | None | ERR10680021 | MDR-TB | lineage6.2.2 | None | SRR15723130 | HR-TB | lineage2.2.1 | None | ERR11488474 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488544 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488684 | MDR-TB | lineage4.3.4.2.1 | None | ERR13285092 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR11488706 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR13291592 | HR-TB | lineage2.2.1 | None | ERR3509858 | MDR-TB | lineage2.2.1;lineage4.3.4.2.1 | None | ERR11488691 | MDR-TB | lineage4.3.4.2.1 | None | ERR2099790 | MDR-TB | lineage4.1.2.1 | es | ERR3132296 | HR-TB | lineage4 | None | SRR24709919 | MDR-TB | lineage2.2.1 | None | SRR29017562 | MDR-TB | lineage4.3.3 | None | ERR4797441 | MDR-TB | lineage4.2.2.2 | in | ERR4797621 | Pre-XDR-TB | lineage2.2.1 | in | SRR29051327 | HR-TB | lineage4.1.2.1 | None | SRR15316019 | MDR-TB | lineage2.2.1 | None | SRR14807570 | MDR-TB | lineage2.2.1 | None | SRR29053345 | HR-TB | lineage4.2.2 | None | SRR29274030 | MDR-TB | lineage4.3.3 | None | SRR29772590 | MDR-TB | lineage4.3.3 | None | SRR25207320 | Pre-XDR-TB | lineage4.2.2 | None | ERR4822354 | MDR-TB | lineage4.2.2 | None | SRR13423613 | Pre-XDR-TB | lineage4.4.2 | None | SRR29053403 | HR-TB | lineage4.1.1.1 | None | SRR1196492 | MDR-TB | lineage4.3.3 | None | SRR29051238 | HR-TB | lineage4.3.4.2 | None | SRR20632802 | Pre-XDR-TB | lineage2.2.1 | None | ERR3132264 | HR-TB | lineage4.9 | None | SRR29273890 | Pre-XDR-TB | lineage4.3.3 | None | ERR212025 | HR-TB | lineage4.9 | mw | ERR10680220 | MDR-TB | lineage4.1.1.3 | None | ERR8975722 | MDR-TB | lineage4.3.3 | None | SAMN02350434 | MDR-TB | lineage4.3.3 | za | ERR4822345 | MDR-TB | lineage4.4.2 | None | ERR5987399 | MDR-TB | lineage4.3.3 | None | ERR4829907 | HR-TB | lineage4.1.2.1 | it | SAMN02585987 | MDR-TB | lineage4.3.3 | za | SRR671744 | MDR-TB | lineage2.2.1 | cn | SRR1723604 | MDR-TB | lineage2.2.1 | None | ERR13191069 | MDR-TB | lineage2.2.2 | None | SAMN03246332 | MDR-TB | lineage2.2.1 | None | ERR4810642 | HR-TB | lineage2.2.1 | cn | SRR8651577 | Pre-XDR-TB | lineage2.2.1 | cn | SRR1140944 | MDR-TB | lineage4.3.3 | None | SRR11662258 | HR-TB | lineage4.5 | None | SRR1173532 | MDR-TB | lineage4.3.3 | None | ERR4808883 | MDR-TB | lineage2.2.1 | za | ERR4831002 | Pre-XDR-TB | lineage4.2.2.2 | np | ERR4831006 | Pre-XDR-TB | lineage4.2.2.2 | np | SRR25389475 | MDR-TB | lineage2.2.1 | None | SAMN03246351 | MDR-TB | lineage2.2.1 | cn | SRR28239687 | HR-TB | lineage4.2.1 | None | ERR4809168 | MDR-TB | lineage4.3.3 | za | ERR4832031 | HR-TB | lineage2.2.1 | vn | SRR8651662 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180315 | MDR-TB | lineage2.2.1 | None | SRR16156743 | Pre-XDR-TB | lineage4.3.3 | None | ERR8975182 | MDR-TB | lineage2.2.1 | None | SRR9971097 | Pre-XDR-TB | lineage4.3.3 | None | ERR8975914 | MDR-TB | lineage4.3.3 | None | ERR3170404 | MDR-TB | lineage5.1.1 | gh | ERR3170488 | MDR-TB | lineage5.1.1 | gh | ERR2516514 | Pre-XDR-TB | lineage4.1.2 | pe | ERR2516598 | Pre-XDR-TB | lineage4.1.1 | pe | ERR2516589 | MDR-TB | lineage4.3.2 | pe | ERR2516492 | Pre-XDR-TB | lineage4.3.3 | pe | ERR2516654 | MDR-TB | lineage2.2.1.1 | pe | ERR2041765 | MDR-TB | lineage4.1.2.1 | rs | SRR960978 | MDR-TB | lineage2.2.1 | cn | SRR6824412 | MDR-TB | lineage2.2.1 | cn | SRR6824304 | MDR-TB | lineage2.2.1;lineage4 | cn | SRR6824494 | MDR-TB | lineage2.2.1 | cn | SRR6824651 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR6824650 | MDR-TB | lineage2.2.1 | cn | SRR6824465 | MDR-TB | lineage2.2.1 | cn | SRR6824295 | MDR-TB | lineage2.2.1 | cn | SRR6824376 | MDR-TB | lineage2.2.1 | cn | SRR6824374 | MDR-TB | lineage2.2.1 | cn | SRR6824433 | MDR-TB | lineage2.2.1 | cn | SRR6824434 | MDR-TB | lineage4.4.2 | cn | SRR6824559 | MDR-TB | lineage2.2.1 | cn | SRR6824456 | MDR-TB | lineage2.2.1 | cn | SRR6824336 | MDR-TB | lineage4.5 | cn | SRR6824646 | MDR-TB | lineage2.2.1;lineage4.5 | cn | SRR6824360 | MDR-TB | lineage4.5 | cn | SRR6824479 | MDR-TB | lineage4.5 | cn | SRR9613552 | MDR-TB | lineage2.2.2 | None | SRR9971053 | MDR-TB | lineage4.3.3 | None | SRR9971374 | Pre-XDR-TB | lineage4.3.3 | None | ERR10679993 | MDR-TB | lineage6.2.3 | None | SAMN02053741 | MDR-TB | lineage4.3.3 | za | SRR29273731 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR11342666 | MDR-TB | lineage4.3.3 | None | SRR1172801 | XDR-TB | lineage4.3.3 | None | SRR25207164 | MDR-TB | lineage2.2.1 | None | DRR130240 | HR-TB | lineage4.2.2 | None | ERR3509862 | MDR-TB | lineage4.3.4.2.1 | None | ERR9119877 | Pre-XDR-TB | lineage4.3.3 | None | SRR1172843 | MDR-TB | lineage4.3.3 | None | SRR28393630 | MDR-TB | lineage4.1.2.1 | None | SRR25206894 | Pre-XDR-TB | lineage2.2.1 | None | SRR16370411 | MDR-TB | lineage4.3.3 | None | SRR5067682 | HR-TB | lineage2.2.1 | vn | SAMN02586022 | MDR-TB | lineage4.3.3 | za | ERR11488776 | MDR-TB | lineage4.3.4.2.1 | None | SAMN02403512 | MDR-TB | lineage4.3.3 | za | SAMN02403513 | MDR-TB | lineage4.3.3 | za | SRR18665471 | MDR-TB | lineage4.1.2.1 | None | SRR833162 | MDR-TB | lineage4.3.3 | None | ERR11488746 | Pre-XDR-TB | lineage4.3.4.2.1 | None | SRR1167250 | MDR-TB | lineage4.3.3 | None | SRR12420310 | MDR-TB | lineage2.2.1 | None | ERR11488917 | MDR-TB | lineage4.3.4.2.1 | None | SRR21691105 | HR-TB | lineage2.2.1 | None | SRR15316177 | HR-TB | lineage2.2.1.1 | None | SRR16156731 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173485 | HR-TB | lineage4.3.3 | None | SRR13583446 | HR-TB | lineage4.1.2 | None | ERR9120007 | MDR-TB | lineage4.3.3 | None | ERR9992827 | MDR-TB | lineage4.3.3 | None | ERR9993143 | XDR-TB | lineage2.2.1 | None | ERR2516199 | MDR-TB | lineage4.1.2.1 | be | ERR2516365 | MDR-TB | lineage2.2.1 | be | ERR2515286 | Pre-XDR-TB | lineage4.3.3 | za | SRR8651591 | MDR-TB | lineage2.2.1.1 | cn | SAMN02350486 | Pre-XDR-TB | lineage4.3.3 | za | SRR25515102 | MDR-TB | lineage2.2.1 | None | ERR4809188 | MDR-TB | lineage2.2.1 | za | ERR3132169 | HR-TB | lineage4.1.2.1 | None | ERR13250187 | MDR-TB | lineage1.2.1.2.1 | None | SRR25207380 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184321 | MDR-TB | lineage4.3.3 | None | ERR5865913 | MDR-TB | lineage4.2.1 | None | ERR6358868 | MDR-TB | lineage4.6.1.1 | None | SRR20632795 | Pre-XDR-TB | lineage2.2.1 | None | SRR1723608 | MDR-TB | lineage2.2.1 | None | ERR7737762 | MDR-TB | lineage4.3.3 | None | ERR3077943 | MDR-TB | lineage1.1.2 | None | ERR6358705 | MDR-TB | lineage4.6.1.1 | None | SRR921502 | Pre-XDR-TB | lineage2.1;lineage2.2.1 | None | SRR19276612 | HR-TB | lineage4.1.1 | None | SRR21714052 | HR-TB | lineage1.1.3.1 | None | SRR833037 | MDR-TB | lineage4.3.3 | None | SRR671727 | MDR-TB | lineage2.2.1 | cn | SRR1144805 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119471 | MDR-TB | lineage4.1.2 | None | ERR12268385 | HR-TB | lineage4.8 | None | ERR11488837 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488500 | MDR-TB | lineage4.3.4.2.1 | None | SRR1181356 | MDR-TB | lineage2.2.1 | None | SAMN03246450 | MDR-TB | lineage2.2.1 | cn | ERR2145524 | MDR-TB | lineage4.2.2.2 | None | ERR13284799 | MDR-TB | lineage4.2.1 | None | SRR1723811 | MDR-TB | lineage2.2.1 | cn | SRR1723982 | MDR-TB | lineage4.4.2 | cn | SRR1723671 | MDR-TB | lineage2.2.1 | cn | SRR1723568 | MDR-TB | lineage2.2.1 | cn | SRR1723658 | MDR-TB | lineage2.2.1 | cn | SRR29055487 | HR-TB | lineage2.2.1 | None | SRR1723980 | Pre-XDR-TB | lineage4.4.2 | cn | ERR13285109 | MDR-TB | lineage4.6.2.2 | None | ERR6358869 | MDR-TB | lineage4.6.1.1 | None | ERR11082674 | MDR-TB | lineage4.8 | None | SRR16370469 | MDR-TB | lineage2.2.1 | None | SRR18213811 | HR-TB | lineage4.6.2.2 | None | SRR29538933 | HR-TB | lineage4.2.1 | None | SRR28044944 | XDR-TB | lineage4.2.2.2 | None | ERR9993144 | XDR-TB | lineage2.2.1 | None | SRR28706614 | MDR-TB | lineage4.2.1.1 | None | ERR2179660 | MDR-TB | lineage4.4.2 | cn | SRR6930899 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256267 | Pre-XDR-TB | lineage4.8 | None | SRR14807637 | MDR-TB | lineage2.2.1 | None | SRR10808440 | HR-TB | lineage4.1.1 | None | SRR10305828 | MDR-TB | lineage2.2.1 | None | ERR11489004 | MDR-TB | lineage2.2.1 | None | SRR10500314 | Pre-XDR-TB | lineage1.1.2 | None | ERR13284963 | MDR-TB | lineage4.8 | None | SRR1184304 | MDR-TB | lineage4.3.3 | None | SRR25207007 | MDR-TB | lineage4.5 | None | SRR29017332 | MDR-TB | lineage4.3.2 | None | ERR13253355 | MDR-TB | lineage4.4.2 | None | ERR13285134 | MDR-TB | lineage4.8 | None | SRR1062847 | MDR-TB | lineage4.3.3 | None | ERR11488635 | MDR-TB | lineage4.3.4.2.1 | None | ERR6358722 | MDR-TB | lineage4.6.1.1 | None | SRR11342641 | MDR-TB | lineage4.3.3 | None | ERR2433007 | MDR-TB | lineage4.3.4.2.1 | None | ERR3509864 | MDR-TB | lineage4.3.4.2.1 | None | SRR25207010 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800452 | Pre-XDR-TB | lineage2.2.1 | in | SRR12420756 | MDR-TB | lineage2.2.1 | None | ERR11488779 | MDR-TB | lineage4.3.4.2.1 | None | SRR21732177 | HR-TB | lineage1.2.1.2.1 | None | SRR1140901 | MDR-TB | lineage2.2.1 | None | SRR12420471 | MDR-TB | lineage2.2.1 | None | SRR13423542 | Pre-XDR-TB | lineage2.2.1 | None | SRR15316325 | HR-TB | lineage2.2.1 | None | ERR553127 | MDR-TB | lineage2.2.1 | None | SRR6832336 | HR-TB | lineage4.3.3 | None | SRR18693860 | HR-TB | lineage1.2.2.2 | None | SRR16156723 | Pre-XDR-TB | lineage4.3.3 | None | ERR11081121 | Pre-XDR-TB | lineage4.7 | None | ERR11081043 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR16156718 | Pre-XDR-TB | lineage4.3.3 | None | ERR13291118 | MDR-TB | lineage4.4.2 | None | ERR11488643 | MDR-TB | lineage4.3.4.2.1 | None | SRR15723174 | Pre-XDR-TB | lineage2.2.1 | None | SRR13583303 | HR-TB | lineage4.3.4.2 | None | ERR4796975 | MDR-TB | lineage4.4.1.1 | in | ERR11488334 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488340 | MDR-TB | lineage4.3.4.2.1 | None | SRR1184389 | MDR-TB | lineage4.3.3 | None | SRR12420479 | Pre-XDR-TB | lineage2.2.1 | None | ERR4810954 | MDR-TB | lineage2.2.1 | cn | ERR2184208 | HR-TB | lineage4.1.1 | pe | ERR4811286 | MDR-TB | lineage2.2.1 | cn | SRR6982440 | MDR-TB | lineage4.3.4.2.1 | None | ERR718488 | MDR-TB | lineage4.5 | th | SRR28393347 | MDR-TB | lineage4.1.2 | None | ERR10680166 | MDR-TB | lineage6.2.2 | None | ERR4810938 | Pre-XDR-TB | lineage2.2.1 | cn | SRR28393959 | MDR-TB | lineage2.2.1.1 | None | ERR11252494 | MDR-TB | lineage4.3.4.2.1 | None | ERR502958 | MDR-TB | lineage2.2.1 | None | SRR29772591 | MDR-TB | lineage4.1.1.3 | None | ERR502899 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911190 | MDR-TB | lineage4.3.3 | za | ERR7911194 | MDR-TB | lineage2.2.1 | za | ERR7911198 | MDR-TB | lineage4.3.3 | za | ERR7911207 | MDR-TB | lineage4.3.3 | za | ERR4831481 | Pre-XDR-TB | lineage1.1.2 | None | ERR7911209 | MDR-TB | lineage4.3.3 | za | ERR7911436 | MDR-TB | lineage2.2.1 | za | ERR7911444 | MDR-TB | lineage4.3.3 | za | ERR9119551 | MDR-TB | lineage4.6.2.2 | None | ERR4831897 | HR-TB | lineage2.2.1 | vn | ERR502957 | MDR-TB | lineage2.2.1 | None | ERR11488709 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR7911443 | MDR-TB | lineage4.3.3 | za | ERR4830712 | HR-TB | lineage4.3.1 | dz | ERR11081003 | HR-TB | lineage4.1.2.1 | None | ERR11081955 | MDR-TB | lineage4.6.2.2 | None | SRR21798443 | HR-TB | lineage4.2.1 | None | ERR7737895 | MDR-TB | lineage4.3.3 | None | SRR12420388 | Pre-XDR-TB | lineage2.2.1 | None | SRR12420591 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA2533899 | MDR-TB | lineage2.2.1 | uz | SRR2101249 | HR-TB | lineage4.6.2.2 | None | ERR1199101 | MDR-TB | lineage4.6.1.2 | cd | ERR2433003 | MDR-TB | lineage4.3.4.2.1 | br | SRR7341648 | Pre-XDR-TB | lineage4.1.2.1 | ro | SAMEA2535156 | MDR-TB | lineage2.2.1 | uz | ERR2515993 | HR-TB | lineage4.1.2.1 | za | ERR2516003 | MDR-TB | lineage2.2.1 | za | SRR6824545 | MDR-TB | lineage2.2.1 | cn | ERR9119541 | MDR-TB | lineage5.1 | None | SRR14801937 | MDR-TB | lineage2.2.1 | None | SRR1723917 | MDR-TB | lineage4.5 | None | SRR9971047 | MDR-TB | lineage4.3.3 | None | ERR11082011 | MDR-TB | lineage2.2.1 | None | ERR11488931 | XDR-TB | lineage4.3.4.2.1 | None | ERR11488996 | MDR-TB | lineage4.3.4.2.1 | None | ERR1035206 | HR-TB | lineage4.8 | pt | ERR13258499 | MDR-TB | lineage2.2.1 | None | ERR13262012 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR12199399 | HR-TB | lineage1.1.1 | None | SRR26399579 | HR-TB | lineage2.2.1 | None | SAMN02350465 | MDR-TB | lineage2.2.1 | za | SRR12420650 | MDR-TB | lineage2.2.1 | None | SAMN02585979 | MDR-TB | lineage2.2.1 | za | SRR28393387 | MDR-TB | lineage2.2.1.1 | None | ERR4872135 | MDR-TB | lineage5.1 | None | SRR29231535 | HR-TB | lineage4.2.2.2 | None | ERR11488515 | MDR-TB | lineage4.3.4.2.1 | None | SRR1723586 | MDR-TB | lineage2.2.1 | None | DRR130150 | MDR-TB | lineage4.2.2 | None | ERR10680057 | MDR-TB | lineage4.4.1.1 | None | ERR10680100 | MDR-TB | lineage4.1 | None | SRR28393316 | MDR-TB | lineage4 | None | SRR28393315 | MDR-TB | lineage4.3.3 | None | SRR21277578 | Pre-XDR-TB | lineage4.5 | None | SRR28394010 | MDR-TB | lineage4.3.3 | None | ERR1213843 | HR-TB | lineage4 | kr | ERR386844 | HR-TB | lineage4.6.2.2 | None | SRR5073900 | HR-TB | lineage2.2.1 | vn | SRR19276621 | Pre-XDR-TB | lineage4.8 | None | SRR12420601 | MDR-TB | lineage2.2.1 | None | SRR5073723 | HR-TB | lineage2.2.1 | vn | SRR25340787 | MDR-TB | lineage4.2.2.2 | None | ERR11488856 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488882 | MDR-TB | lineage4.3.4.2.1 | None | ERR13288983 | MDR-TB | lineage4.3.3 | None | ERR11081855 | MDR-TB | lineage4.2.1 | None | ERR13286209 | MDR-TB | lineage4.3.3 | None | SRR1173156 | MDR-TB | lineage4.3.3 | None | SRR25206970 | Pre-XDR-TB | lineage2.2.1 | None | SRR25340765 | MDR-TB | lineage1.1.2 | None | ERR13286054 | MDR-TB | lineage2.2.1 | None | ERR13286115 | MDR-TB | lineage4.3.3 | None | SRR15315838 | MDR-TB | lineage4.4.2 | None | ERR4813791 | HR-TB | lineage4.3.4.2 | br | SRR924233 | Pre-XDR-TB | lineage4.3.3 | None | SRR21276914 | MDR-TB | lineage2.2.1 | None | SRR9971280 | MDR-TB | lineage4.3.3 | None | ERR7737693 | MDR-TB | lineage4.3.3 | None | ERR11488562 | MDR-TB | lineage4.3.4.2.1 | None | SRR25515377 | MDR-TB | lineage2.2.1 | None | ERR126642 | HR-TB | lineage4.1.1.3 | mw | SRR12420737 | MDR-TB | lineage2.2.1 | None | ERR11488411 | MDR-TB | lineage4.3.4.2.1 | None | SRR25340760 | MDR-TB | lineage1.1.2 | None | ERR11043528 | MDR-TB | lineage4.8 | None | SRR15315933 | MDR-TB | lineage2.2.1 | None | ERR3273207 | MDR-TB | lineage2.2.1.1 | None | SRR833140 | MDR-TB | lineage4.3.3 | None | SRR18715254 | MDR-TB | lineage4.2.1 | None | SRR1184299 | MDR-TB | lineage4.3.3 | None | DRR130195 | MDR-TB | lineage4.2.2 | None | SRR1173000 | MDR-TB | lineage4.3.3 | None | SRR29096121 | HR-TB | lineage4.4.2 | None | SRR29051262 | HR-TB | lineage4.1.2.1 | None | SRR3105741 | Pre-XDR-TB | lineage4.2.1 | None | ERR552915 | MDR-TB | lineage4.1.2.1;lineage4.3.4.2.1 | None | ERR2179666 | MDR-TB | lineage4.5 | cn | ERR2179680 | Pre-XDR-TB | lineage4.4.2 | cn | SRR10040263 | MDR-TB | lineage2.2.1 | None | ERR11488538 | MDR-TB | lineage4.3.4.2.1 | None | ERR13285022 | MDR-TB | lineage2.2.1 | None | SRR1723466 | HR-TB | lineage2.2.1 | cn | SRR15506889 | MDR-TB | lineage1.1.3.1 | None | SRR1019134 | MDR-TB | lineage4.3.3 | None | SAMN03246349 | MDR-TB | lineage2.2.1 | cn | ERR553128_ERR553127_ERR553126 | MDR-TB | lineage2.2.1 | None | SRR1196670 | MDR-TB | lineage4.3.3 | None | ERR9120006 | MDR-TB | lineage4.3.3 | None | ERR13284031 | MDR-TB | lineage2.2.1 | None | SRR6930929 | HR-TB | lineage2.2.2 | None | DRR130162 | MDR-TB | lineage2.2.1 | None | ERR13285158 | Pre-XDR-TB | lineage4.7 | None | SRR29772545 | MDR-TB | lineage2.2.1 | None | SRR29056347 | MDR-TB | lineage2.2.1 | None | SRR22873602 | Pre-XDR-TB | lineage2.2.1 | None | ERR11252445 | MDR-TB | lineage2.2.1 | None | ERR9119577 | MDR-TB | lineage4.6.2.2 | None | ERR4872251 | MDR-TB | lineage5.1.1 | None | SRR1723719 | MDR-TB | lineage2.2.1 | None | ERR10680112 | MDR-TB | lineage4.1.3 | None | ERR6358725 | MDR-TB | lineage4.6.1.2 | None | SRR21576538 | MDR-TB | lineage2.2.1 | None | SRR6930907 | MDR-TB | lineage2.2.1 | None | ERR9993093 | MDR-TB | lineage4.3.3 | None | SRR28240124 | HR-TB | lineage4 | None | ERR11488523 | MDR-TB | lineage4.3.4.2.1 | None | ERR4553408 | MDR-TB | lineage4.3 | None | SRR10315701 | MDR-TB | lineage4.3.3 | None | SRR1173107 | MDR-TB | lineage4.3.3 | None | SRR18665457 | MDR-TB | lineage4.1.2.1 | None | ERR11488773 | MDR-TB | lineage4.3.4.2.1 | None | SRR13583473 | HR-TB | lineage4.1.2.1 | None | SRR15316075 | MDR-TB | lineage2.2.1.2 | None | SRR1011461 | MDR-TB | lineage4.3.3 | None | SRR1723605 | MDR-TB | lineage2.2.1 | None | SRR6832059 | HR-TB | lineage4.2.1 | None | SAMN02586050 | MDR-TB | lineage4.3.3 | za | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR1196754 | MDR-TB | lineage4.3.3 | None | SRR11349133 | MDR-TB | lineage4.3.3 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | SRR11342656 | MDR-TB | lineage2.2.1 | None | ERR11044862 | HR-TB | lineage4.2.1 | None | ERR11775618 | MDR-TB | lineage4.3.3 | None | ERR13285029 | MDR-TB | lineage4.8 | None | SRR11349205 | MDR-TB | lineage2.2.1 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | ERR11081138 | MDR-TB | lineage4.8 | None | ERR11081999 | HR-TB | lineage4.1.2.1 | None | SRR6930931 | HR-TB | lineage2.2.1 | None | SRR12420276 | MDR-TB | lineage2.2.1 | None | SRR29050886 | MDR-TB | lineage4.4.1.1 | None | SRR7765063 | Pre-XDR-TB | lineage4.8 | None | ERR3509857 | MDR-TB | lineage4.3.4.2.1 | None | SRR9971214 | MDR-TB | lineage2.2.1 | None | ERR13260462 | HR-TB | lineage4.3.3 | None | SRR1175307 | XDR-TB | lineage4.3.3 | None | SRR10305625 | MDR-TB | lineage2.2.1 | None | SRR1062854 | Pre-XDR-TB | lineage4.3.3 | None | ERR11488620 | MDR-TB | lineage4.3.4.2.1 | None | SRR21576570 | MDR-TB | lineage2.2.1 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | SRR17657932 | HR-TB | lineage4 | None | ERR11488532 | MDR-TB | lineage4.3.4.2.1 | None | SRR25206889 | Pre-XDR-TB | lineage2.1 | None | ERR11488440 | MDR-TB | lineage4.3.4.2.1 | None | SRR18002991 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266638 | HR-TB | lineage2.2.1 | None | SRR12416846 | MDR-TB | lineage4.7 | None | SRR6855833 | HR-TB | lineage4.1.2.1 | None | SRR10315611 | Pre-XDR-TB | lineage4.3.3 | None | ERR13284728 | MDR-TB | lineage4.1.2.1 | None | SRR9971182 | MDR-TB | lineage4.3.3 | None | SRR14802156 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284950 | MDR-TB | lineage4.8 | None | ERR551381_ERR551380 | MDR-TB | lineage2.2.1 | None | ERR13290910 | MDR-TB | lineage4.2.2 | None | SRR21663286 | HR-TB | lineage4.2.2 | None | SRR1019170 | MDR-TB | lineage4.3.3 | None | ERR11488737 | Pre-XDR-TB | lineage4.3.4.2.1 | None | SRR10315612 | Pre-XDR-TB | lineage4.3.3 | None | SRR22873607 | XDR-TB | lineage2.2.1 | None | SRR6824357 | Pre-XDR-TB | lineage4.4.2 | None | SRR1062833 | MDR-TB | lineage4.3.3 | None | SRR29772462 | MDR-TB | lineage2.2.1 | None | ERR11488962 | MDR-TB | lineage4.3.4.2.1 | None | ERR13273328 | MDR-TB | lineage2.2.1 | None | SRR29681461 | HR-TB | lineage4.1.2.1 | None | ERR13284943 | MDR-TB | lineage4.8 | None | ERR11081269 | MDR-TB | lineage4.7 | None | SRR12416843 | MDR-TB | lineage1.2.1.2.1 | None | ERR13254143 | MDR-TB | lineage4.2.2 | None | SRR29081652 | MDR-TB | lineage4 | None | SRR29274082 | Pre-XDR-TB | lineage4.3.3 | None | SRR29055693 | MDR-TB | lineage2.2.1 | None | ERR7737888 | MDR-TB | lineage4.3.3 | None | SRR1173403 | MDR-TB | lineage4.3.3 | None | SRR21279442 | HR-TB | lineage2.2.1.1 | None | SRR1175039 | HR-TB | lineage4.3.3 | None | SRR9971170 | MDR-TB | lineage4.3.3 | None | ERR13288943 | XDR-TB | lineage4.3.3 | None | ERR11488512 | MDR-TB | lineage4.3.4.2.1 | None | ERR10680204 | MDR-TB | lineage4.1.2.1 | None | SRR21576613 | MDR-TB | lineage4.2.2 | None | ERR11488383 | MDR-TB | lineage4.3.4.2.1 | None | ERR7737758 | MDR-TB | lineage4.3.4.2.1 | None | SRR11662536 | MDR-TB | lineage2.2.1 | None | SRR10315609 | Pre-XDR-TB | lineage4.3.3 | None | SRR16156753 | Pre-XDR-TB | lineage4.3.3 | None | ERR11488400 | MDR-TB | lineage4.3.4.2.1 | None | ERR13266123 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR13266796 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR29539406 | HR-TB | lineage2.2.1;lineage4.2.1 | None | SRR21277848 | MDR-TB | lineage2.2.1.2 | None | SRR847782 | Pre-XDR-TB | lineage4.3.3 | za | ERR13261258 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR1011476 | MDR-TB | lineage4.3.3 | None | ERR11082840 | HR-TB | lineage4.1.2.1 | None | ERR11488772 | MDR-TB | lineage4.3.4.2.1 | None | SRR1019140 | MDR-TB | lineage2.2.1 | None | ERR11252568 | MDR-TB | lineage4.3.4.2.1 | None | SRR30180322 | MDR-TB | lineage2.2.1 | None | ERR5987411 | Pre-XDR-TB | lineage4.3.3 | None | SRR13583367 | MDR-TB | lineage4.4.1.1 | None | SRR6832468 | MDR-TB | lineage4.2.1 | None | SRR1140955 | Pre-XDR-TB | lineage4.3.3 | None | SRR29056125 | MDR-TB | lineage4.8 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SAMN02053768 | MDR-TB | lineage4.3.3 | za | SRR1167285 | MDR-TB | lineage4.3.3 | None | SRR28045583 | Pre-XDR-TB | lineage4.1.1 | None | SRR847775 | Pre-XDR-TB | lineage4.3.3 | za | SRR1723549 | MDR-TB | lineage2.2.1 | cn | SRR1723701 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR1723714 | MDR-TB | lineage2.2.1 | cn | SRR9971225 | MDR-TB | lineage4.3.3 | None | SRR1723793 | MDR-TB | lineage2.2.1 | cn | SRR1181371 | MDR-TB | lineage2.2.1;lineage4 | None | SRR15316213 | HR-TB | lineage2.2.1 | None | ERR11081794 | MDR-TB | lineage4.1.2.1 | None | ERR9119643 | MDR-TB | lineage5.1.1 | None | SRR16156695 | Pre-XDR-TB | lineage4.3.3 | None | ERR5987340 | MDR-TB | lineage4.3.3 | None | ERR551380 | MDR-TB | lineage2.2.1 | None | SRR6824387 | MDR-TB | lineage2.2.1 | cn | ERR11488373 | MDR-TB | lineage4.3.4.2.1 | None | SRR1165327 | MDR-TB | lineage4.3.3 | None | ERR8773876 | Pre-XDR-TB | lineage4.3.3 | None | ERR13298139 | MDR-TB | lineage4.4.2 | None | ERR551381 | MDR-TB | lineage2.2.1 | None | SRR10315458 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR1140946 | MDR-TB | lineage4.3.3 | None | SRR29050875 | HR-TB | lineage4.1.2 | None | ERR4813649 | HR-TB | lineage4.1.2.1 | None | SRR11567787 | MDR-TB | lineage2.2.1 | None | SRR5153717 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR12420647 | MDR-TB | lineage2.2.1 | None | SRR9971336 | Pre-XDR-TB | lineage4.3.3 | None | SRR1723585 | MDR-TB | lineage2.2.1 | None | SRR1723607 | MDR-TB | lineage2.2.1 | None | SRR1196587 | MDR-TB | lineage4.3.3 | None | ERR13260010 | Pre-XDR-TB | lineage2.2.2 | None | ERR11488994 | MDR-TB | lineage4.3.4.2.1 | None | DRR130115 | MDR-TB | lineage4.4.2 | None | ERR11488496 | MDR-TB | lineage4.3.4.2.1 | None | SRR11349204 | MDR-TB | lineage2.2.1 | None | SRR11342667 | MDR-TB | lineage4.3.3 | None | SRR11342654 | MDR-TB | lineage2.2.1 | None | SRR11349194 | MDR-TB | lineage4.3.3 | None | SRR29050634 | HR-TB | lineage4.1.2.1 | None | SAMN02586075 | XDR-TB | lineage4.3.3 | None | ERR8773553 | MDR-TB | lineage4.2.2.2 | None | ERR351912 | HR-TB | lineage4.6.2.2 | None | SRR1173574 | MDR-TB | lineage4.3.3 | None | ERR13284955 | MDR-TB | lineage4.7 | None | SRR15368990 | Pre-XDR-TB | lineage4.5 | None | ERR11488450 | MDR-TB | lineage4.3.4.2.1 | None | SRR833149 | MDR-TB | lineage4.3.3 | None | ERR11488807 | MDR-TB | lineage4.3.4.2.1 | None | SRR29772541 | MDR-TB | lineage1.2.2.2 | None | ERR11489063 | Pre-XDR-TB | lineage4.3.4.2.1 | None | SRR20969995 | MDR-TB | lineage4.4.2 | None | SRR10869188 | Pre-XDR-TB | lineage4.3.3 | None | ERR13291072 | MDR-TB | lineage2.2.1 | None | ERR13261391 | Pre-XDR-TB | lineage4.3.3 | None | SRR25207253 | Pre-XDR-TB | lineage2.2.1 | None | SRR1196686 | MDR-TB | lineage4.3.3 | None | ERR3509865 | HR-TB | lineage4.3.4.2.1 | None | SRR1173106 | HR-TB | lineage4.3.3 | None | ERR8773555 | MDR-TB | lineage4.2.2.2 | None | ERR7737719 | MDR-TB | lineage2.2.1 | None | SRR16156761 | Pre-XDR-TB | lineage4.3.3 | None | ERR11081950 | MDR-TB | lineage4.8 | None |
|---|
