Run ID: ERR2229210
Sample name:
Date: 31-03-2023 16:53:26
Number of reads: 2461130
Percentage reads mapped: 97.33
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576089 | p.Ala254Gly | missense_variant | 0.38 |
rpoC | 764540 | p.Val391Leu | missense_variant | 0.2 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169272 | c.1341C>G | synonymous_variant | 0.13 |
PPE35 | 2169278 | c.1335T>C | synonymous_variant | 0.15 |
PPE35 | 2169281 | c.1332T>G | synonymous_variant | 0.15 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.48 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.5 |
PPE35 | 2170147 | p.Ser156Ala | missense_variant | 0.15 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518864 | c.750G>C | synonymous_variant | 0.14 |
kasA | 2518879 | c.765A>G | synonymous_variant | 0.12 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.22 |
fbiD | 3339746 | p.Ala210Gly | missense_variant | 0.22 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
Rv3083 | 3448500 | c.-4A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3448501 | c.-3G>T | upstream_gene_variant | 1.0 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 0.18 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.36 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.46 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.43 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.43 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.33 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.31 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.31 |
embB | 4248324 | p.Ala604Gly | missense_variant | 0.22 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |