Run ID: ERR2229349
Sample name:
Date: 31-03-2023 17:03:54
Number of reads: 1795716
Percentage reads mapped: 98.52
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.25 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472225 | n.380C>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472368 | n.523A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472582 | n.737G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472585 | n.740A>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472623 | n.778A>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472647 | n.802C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474202 | n.545T>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474218 | n.561T>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474253 | n.596A>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.15 |
fabG1 | 1673346 | c.-94C>G | upstream_gene_variant | 0.11 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.29 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2167965 | p.Ala883Gly | missense_variant | 0.17 |
PPE35 | 2167967 | c.2646A>C | synonymous_variant | 0.13 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.56 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.55 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2290202 | c.-961C>T | upstream_gene_variant | 0.14 |
Rv2752c | 3065899 | p.Pro98His | missense_variant | 0.12 |
rpoA | 3878599 | c.-92C>G | upstream_gene_variant | 1.0 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.18 |
clpC1 | 4039645 | p.His354Asp | missense_variant | 0.12 |
embC | 4241630 | p.Phe590Leu | missense_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244821 | p.Gly530Val | missense_variant | 1.0 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.29 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.5 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.5 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.33 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.43 |
embB | 4247104 | c.594delC | frameshift_variant | 0.2 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |