Run ID: ERR2229359
Sample name:
Date: 31-03-2023 17:06:20
Number of reads: 1398905
Percentage reads mapped: 99.03
Strain: lineage4.8
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
pncA | 2289038 | p.Trp68Cys | missense_variant | 0.14 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.23 |
mshA | 576235 | c.888C>A | synonymous_variant | 0.2 |
ccsA | 620494 | p.Arg202Trp | missense_variant | 0.13 |
rpoB | 762179 | c.2373C>A | synonymous_variant | 0.12 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpS5 | 778778 | p.Val43Asp | missense_variant | 0.12 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
fbiC | 1305008 | p.Ile693Thr | missense_variant | 0.18 |
embR | 1416851 | p.Leu166Pro | missense_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.2 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2167965 | p.Ala883Gly | missense_variant | 0.19 |
PPE35 | 2167967 | c.2646A>C | synonymous_variant | 0.2 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169278 | c.1335T>C | synonymous_variant | 0.16 |
PPE35 | 2169281 | c.1332T>G | synonymous_variant | 0.17 |
PPE35 | 2169287 | c.1326T>C | synonymous_variant | 0.13 |
PPE35 | 2169902 | p.Leu237Phe | missense_variant | 0.2 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.51 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.52 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518774 | c.661delG | frameshift_variant | 0.12 |
kasA | 2518879 | c.765A>G | synonymous_variant | 0.31 |
kasA | 2518882 | c.768C>A | synonymous_variant | 0.29 |
kasA | 2519140 | c.1026G>C | synonymous_variant | 0.28 |
kasA | 2519143 | c.1029G>C | synonymous_variant | 0.28 |
kasA | 2519276 | p.Glu388Lys | missense_variant | 0.12 |
ribD | 2987224 | p.Asp129Gly | missense_variant | 0.11 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 0.24 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246196 | c.-318C>T | upstream_gene_variant | 0.17 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.56 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.56 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.5 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.3 |
embB | 4246863 | p.Val117Asp | missense_variant | 0.13 |
aftB | 4267313 | c.1524C>T | synonymous_variant | 0.12 |
aftB | 4268620 | p.Val73Leu | missense_variant | 0.18 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-6_*1407del | transcript_ablation | 1.0 |