Run ID: ERR2229666
Sample name:
Date: 31-03-2023 17:24:00
Number of reads: 1035905
Percentage reads mapped: 99.31
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576111 | p.Ala255Gly | missense_variant | 0.19 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473645 | n.-13G>T | upstream_gene_variant | 0.22 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475268 | n.1611T>A | non_coding_transcript_exon_variant | 0.13 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.2 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169044 | c.1569G>C | synonymous_variant | 0.2 |
PPE35 | 2169351 | p.Ala421Gly | missense_variant | 0.13 |
PPE35 | 2169902 | p.Leu237Phe | missense_variant | 0.19 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.4 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.4 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518879 | c.765A>G | synonymous_variant | 0.17 |
kasA | 2518882 | c.768C>A | synonymous_variant | 0.17 |
thyA | 3074285 | c.187T>C | synonymous_variant | 0.12 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 0.21 |
clpC1 | 4039523 | c.1182C>T | synonymous_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.29 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.41 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.41 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.17 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.17 |
embB | 4249768 | c.3255C>A | synonymous_variant | 0.13 |
aftB | 4267895 | c.942C>T | synonymous_variant | 0.29 |
ethA | 4326978 | p.His166Asn | missense_variant | 0.12 |
ethR | 4326982 | c.-567C>G | upstream_gene_variant | 0.13 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408463 | c.-261C>T | upstream_gene_variant | 0.12 |
Rv3083 | 3448497 | c.-6_*1408del | transcript_ablation | 1.0 |