Run ID: ERR2446370
Sample name:
Date: 14-08-2022 13:19:44
Number of reads: 1707233
Percentage reads mapped: 99.98
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 0.99 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476429 | n.2772A>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476513 | n.2856G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476523 | n.2866T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476539 | n.2882A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476542 | n.2885T>C | non_coding_transcript_exon_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
panD | 4044445 | c.-164G>C | upstream_gene_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |