Run ID: ERR2510406
Sample name:
Date: 31-03-2023 18:43:31
Number of reads: 877347
Percentage reads mapped: 99.57
Strain: lineage4.5
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
rpsL | 781687 | p.Lys43Arg | missense_variant | 1.0 | streptomycin |
katG | 2155168 | p.Ser315Asn | missense_variant | 1.0 | isoniazid |
ethA | 4326981 | p.Gln165* | stop_gained | 1.0 | ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 7044 | p.Asn602Ser | missense_variant | 0.12 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7892 | c.591G>A | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620029 | c.139C>T | synonymous_variant | 1.0 |
rpoB | 760608 | c.804_805delGT | frameshift_variant | 0.14 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406101 | p.Pro414Ser | missense_variant | 1.0 |
embR | 1416545 | p.Thr268Ile | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473666 | n.9G>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474018 | n.361G>C | non_coding_transcript_exon_variant | 0.29 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168244 | p.Ser790Asn | missense_variant | 0.15 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.35 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.36 |
PPE35 | 2170568 | p.Ile15Met | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2746385 | p.His405Leu | missense_variant | 0.11 |
Rv2752c | 3065881 | p.Gly104Asp | missense_variant | 0.11 |
Rv3083 | 3449116 | p.Ala205Thr | missense_variant | 1.0 |
Rv3083 | 3449393 | p.Leu297Ser | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474376 | p.Ala124Thr | missense_variant | 1.0 |
clpC1 | 4038318 | p.Pro796Leu | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244350 | p.Leu373Pro | missense_variant | 0.12 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.13 |
embB | 4248824 | p.Ser771Ala | missense_variant | 0.12 |
embB | 4248844 | c.2331G>A | synonymous_variant | 0.11 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |