Run ID: ERR2513912
Sample name:
Date: 20-10-2023 11:23:02
Number of reads: 1619125
Percentage reads mapped: 97.09
Strain: lineage4.5
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | R | rrs n.888G>A (0.61) |
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.61 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7892 | c.591G>A | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620029 | c.139C>T | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406101 | p.Pro414Ser | missense_variant | 1.0 |
embR | 1416545 | p.Thr268Ile | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.55 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.7 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.47 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170035 | p.Val193Ala | missense_variant | 1.0 |
PPE35 | 2170568 | p.Ile15Met | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3449393 | p.Leu297Ser | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474376 | p.Ala124Thr | missense_variant | 1.0 |
fbiA | 3641074 | p.Ala178Thr | missense_variant | 1.0 |
clpC1 | 4038318 | p.Pro796Leu | missense_variant | 0.98 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |