Run ID: ERR2515551
Sample name:
Date: 31-03-2023 20:59:35
Number of reads: 752771
Percentage reads mapped: 99.63
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
mshA | 576424 | c.1077T>G | synonymous_variant | 0.17 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776798 | c.1683G>A | synonymous_variant | 0.12 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406341 | p.Tyr334Asp | missense_variant | 0.25 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rpsA | 1833388 | c.-153_-151delGTG | upstream_gene_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154878 | p.Trp412Arg | missense_variant | 0.12 |
katG | 2155136 | p.Thr326Ala | missense_variant | 0.11 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448447 | c.-57T>C | upstream_gene_variant | 0.11 |
Rv3083 | 3449072 | p.Val190Ala | missense_variant | 0.11 |
Rv3083 | 3449291 | p.Lys263Met | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiB | 3642875 | c.1341G>A | synonymous_variant | 0.2 |
rpoA | 3878169 | c.339G>C | synonymous_variant | 0.11 |
panD | 4044158 | p.Glu42Lys | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4245151 | p.Val640Ala | missense_variant | 0.1 |
embB | 4248610 | c.2097C>A | synonymous_variant | 0.12 |
embB | 4248678 | p.Met722Lys | missense_variant | 0.11 |
aftB | 4267440 | p.Ile466Thr | missense_variant | 0.17 |
aftB | 4268043 | p.Ala265Gly | missense_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |