Run ID: ERR2515796
Sample name:
Date: 31-03-2023 21:07:30
Number of reads: 315618
Percentage reads mapped: 99.68
Strain: lineage4.3.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.2 | Euro-American (LAM) | LAM3 | None | 0.99 |
lineage4.3.2.1 | Euro-American (LAM) | LAM3 | RD761 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5520 | p.Pro94Leu | missense_variant | 1.0 |
gyrA | 7222 | c.-80C>T | upstream_gene_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491768 | p.Ala329Val | missense_variant | 0.12 |
rpoB | 760464 | p.Ile220Val | missense_variant | 0.17 |
rpoB | 760927 | p.Thr374Met | missense_variant | 0.13 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
rpoC | 765542 | p.Thr725Ala | missense_variant | 0.1 |
rpoC | 766892 | p.Phe1175Ile | missense_variant | 0.1 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776499 | p.Gly661Ala | missense_variant | 0.14 |
mmpL5 | 779286 | c.-806A>G | upstream_gene_variant | 0.1 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781845 | p.Lys96* | stop_gained | 0.11 |
fbiC | 1304327 | p.Leu466Gln | missense_variant | 0.15 |
fbiC | 1305329 | p.Leu800His | missense_variant | 0.13 |
fbiC | 1305332 | p.Glu801Gly | missense_variant | 0.13 |
Rv1258c | 1406190 | p.Ala384Val | missense_variant | 0.11 |
Rv1258c | 1406883 | p.Ala153Val | missense_variant | 0.12 |
Rv1258c | 1406926 | c.415T>C | synonymous_variant | 0.13 |
embR | 1417033 | p.Ile105Met | missense_variant | 0.11 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472337 | n.492C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473775 | n.118A>G | non_coding_transcript_exon_variant | 0.14 |
fabG1 | 1673820 | p.Met127Ile | missense_variant | 0.13 |
inhA | 1674926 | p.Val242Ala | missense_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102175 | c.867delT | frameshift_variant | 0.15 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289044 | c.198G>A | synonymous_variant | 0.1 |
eis | 2714252 | p.Leu361Phe | missense_variant | 0.13 |
eis | 2714968 | p.Glu122Gly | missense_variant | 0.2 |
ahpC | 2726377 | c.186delT | frameshift_variant | 0.11 |
pepQ | 2860471 | c.-53C>T | upstream_gene_variant | 0.22 |
ribD | 2987133 | p.Gly99Cys | missense_variant | 0.14 |
ribD | 2987532 | p.Gly232Arg | missense_variant | 0.25 |
Rv2752c | 3064679 | p.Glu505Lys | missense_variant | 0.1 |
Rv2752c | 3067136 | c.-945A>T | upstream_gene_variant | 0.13 |
thyX | 3067886 | c.59delC | frameshift_variant | 0.15 |
thyA | 3073752 | c.720G>A | synonymous_variant | 0.1 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448912 | p.Ile137Val | missense_variant | 0.11 |
Rv3083 | 3448928 | p.Tyr142Cys | missense_variant | 0.11 |
Rv3083 | 3449349 | c.846C>T | synonymous_variant | 0.14 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568541 | p.Pro47Ser | missense_variant | 0.18 |
fbiA | 3640433 | c.-110T>C | upstream_gene_variant | 0.12 |
fbiA | 3641186 | p.Asn215Ser | missense_variant | 0.15 |
fbiB | 3642370 | p.Ala279Val | missense_variant | 0.14 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244974 | p.Ala581Val | missense_variant | 0.22 |
embB | 4248674 | p.Ser721Pro | missense_variant | 0.2 |
aftB | 4267748 | c.1089T>C | synonymous_variant | 0.13 |
ethA | 4326255 | p.Asn407Tyr | missense_variant | 0.11 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407582 | c.621T>C | synonymous_variant | 1.0 |
gid | 4408125 | p.Leu26Phe | missense_variant | 0.1 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |