Run ID: ERR2516334
Sample name:
Date: 19-10-2023 23:35:35
Number of reads: 11488417
Percentage reads mapped: 99.66
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 0.75 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 7117 | p.Met626Ile | missense_variant | 0.74 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 0.36 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.28 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 778735 | c.-255G>A | upstream_gene_variant | 0.77 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 0.81 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154915 | c.1197A>G | synonymous_variant | 0.26 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518205 | p.Ser31Arg | missense_variant | 0.68 |
ald | 3086767 | c.-53A>C | upstream_gene_variant | 0.77 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 0.19 |
fbiD | 3338935 | c.-183T>C | upstream_gene_variant | 0.8 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 0.22 |
Rv3236c | 3612118 | c.999G>A | synonymous_variant | 0.8 |
embC | 4242161 | p.Ala767Thr | missense_variant | 0.72 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 0.99 |
embA | 4244000 | c.768G>A | synonymous_variant | 0.72 |
whiB6 | 4338250 | p.Ala91Val | missense_variant | 0.75 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |