Run ID: ERR2693243
Sample name:
Date: 31-03-2023 23:02:30
Number of reads: 935100
Percentage reads mapped: 97.17
Strain:
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5671 | c.432C>T | synonymous_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759837 | c.33_44dupTAGTCCTAGTCC | disruptive_inframe_insertion | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 0.97 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776261 | c.2220C>A | synonymous_variant | 0.2 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473079 | n.1234G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474084 | n.427G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.38 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156056 | p.Gly19Val | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168460 | p.Asn718Ser | missense_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
folC | 2746572 | p.Arg343Cys | missense_variant | 1.0 |
ribD | 2987584 | p.Gly249Asp | missense_variant | 1.0 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474123 | c.117G>A | synonymous_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
Rv3236c | 3612530 | p.Phe196Cys | missense_variant | 1.0 |
fbiA | 3640391 | c.-152C>G | upstream_gene_variant | 1.0 |
fbiA | 3641440 | p.Gly300Trp | missense_variant | 0.97 |
rpoA | 3878512 | c.-6_-5insGAA | upstream_gene_variant | 1.0 |
ddn | 3987111 | p.Leu90Val | missense_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |