Run ID: ERR3129940
Sample name:
Date: 01-04-2023 00:16:54
Number of reads: 1223719
Percentage reads mapped: 99.29
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
mshA | 576649 | c.1302C>T | synonymous_variant | 0.13 |
rpoB | 760115 | c.309C>T | synonymous_variant | 0.98 |
rpoB | 760422 | p.Leu206Ile | missense_variant | 0.12 |
rpoC | 764021 | c.652C>A | synonymous_variant | 0.13 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170188 | p.Glu142Gly | missense_variant | 0.15 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
folC | 2747595 | p.Asn2Asp | missense_variant | 0.1 |
Rv2752c | 3064758 | c.1434G>T | synonymous_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiB | 3641727 | p.Glu65* | stop_gained | 0.14 |
panD | 4044168 | c.114G>T | synonymous_variant | 0.13 |
embC | 4240648 | c.786C>T | synonymous_variant | 0.17 |
embC | 4242220 | c.2358A>C | synonymous_variant | 0.2 |
embC | 4242351 | p.Pro830Gln | missense_variant | 0.12 |
embC | 4242421 | c.2559_2560insG | frameshift_variant | 0.18 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4244273 | c.1041G>T | synonymous_variant | 0.14 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |