Run ID: ERR3132205
Sample name:
Date: 01-04-2023 00:30:41
Number of reads: 874915
Percentage reads mapped: 99.68
Strain: lineage4.6.1.2
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
lineage4.6.1 | Euro-American (Uganda) | T2 | RD724 | 1.0 |
lineage4.6.1.2 | Euro-American | T2 | RD724 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gid | 4408087 | c.115delC | frameshift_variant | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7539 | p.Thr80Ala | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoB | 761152 | p.Leu449Gln | missense_variant | 0.11 |
rpoC | 764810 | p.Pro481Thr | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1416410 | p.Leu313Arg | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472104 | n.259G>T | non_coding_transcript_exon_variant | 0.15 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.22 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102350 | c.693G>T | synonymous_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.12 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.12 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv2752c | 3065920 | p.Pro91Leu | missense_variant | 1.0 |
Rv3083 | 3448844 | p.Cys114Tyr | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474200 | p.Lys65Met | missense_variant | 0.12 |
rpoA | 3878434 | p.Pro25Leu | missense_variant | 0.2 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245055 | p.Thr608Asn | missense_variant | 1.0 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.13 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.14 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.14 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.14 |
aftB | 4267766 | c.1071G>A | synonymous_variant | 0.12 |
aftB | 4268342 | c.495C>G | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407932 | p.Leu91Val | missense_variant | 1.0 |