Run ID: ERR3994114
Sample name:
Date: 01-04-2023 03:42:44
Number of reads: 917668
Percentage reads mapped: 99.58
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5077 | c.-163_-162insC | upstream_gene_variant | 0.5 |
gyrB | 6438 | p.Pro400Arg | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoB | 761580 | p.Glu592Gln | missense_variant | 0.11 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 778794 | c.-314T>C | upstream_gene_variant | 0.1 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1305409 | p.Ala827Thr | missense_variant | 0.22 |
Rv1258c | 1407127 | p.Arg72Cys | missense_variant | 0.29 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475974 | n.2317A>G | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169953 | c.660C>T | synonymous_variant | 0.12 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
folC | 2746983 | p.Gly206Ser | missense_variant | 0.18 |
folC | 2747265 | p.Gly112Arg | missense_variant | 0.11 |
pepQ | 2859802 | p.Arg206Gln | missense_variant | 0.12 |
ribD | 2987462 | c.624C>A | synonymous_variant | 0.2 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3338999 | c.-118delC | upstream_gene_variant | 0.11 |
fbiD | 3339418 | p.Arg101Cys | missense_variant | 0.14 |
Rv3083 | 3448346 | c.-158C>G | upstream_gene_variant | 0.11 |
Rv3083 | 3449102 | c.603dupC | frameshift_variant | 0.13 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475004 | p.Pro333Leu | missense_variant | 0.11 |
Rv3236c | 3612518 | p.Tyr200Cys | missense_variant | 0.15 |
fbiB | 3642534 | c.1003delG | frameshift_variant | 0.11 |
rpoA | 3878424 | c.84G>A | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4243482 | p.Ala84Thr | missense_variant | 0.11 |
embB | 4249296 | c.2785_2786delTG | frameshift_variant | 0.11 |
ubiA | 4269934 | c.-101C>G | upstream_gene_variant | 0.11 |
ethR | 4328184 | c.638delG | frameshift_variant | 0.1 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |