TB-Profiler result

Run: ERR4457794
Summary

Run ID: ERR4457794

Sample name:

Date: 01-04-2023 06:04:42

Number of reads: 1427874

Percentage reads mapped: 99.52

Strain: lineage4

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5076 c.-164_-163insT upstream_gene_variant 1.0
gyrB 6061 p.Ser274Arg missense_variant 0.97
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
rpoB 761889 p.Val695Leu missense_variant 0.98
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775858 p.Gly875Arg missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rplC 801009 c.201A>G synonymous_variant 0.97
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1474343 n.686C>T non_coding_transcript_exon_variant 0.22
tlyA 1917972 c.33A>G synonymous_variant 1.0
PPE35 2169799 c.814C>T synonymous_variant 0.96
Rv1979c 2223214 c.-50A>C upstream_gene_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
Rv2752c 3065517 c.675C>T synonymous_variant 0.96
ald 3086788 c.-32T>C upstream_gene_variant 0.12
fprA 3474299 p.Asp98Gly missense_variant 1.0
rpoA 3878595 c.-88C>T upstream_gene_variant 0.5
embA 4242643 c.-590C>T upstream_gene_variant 1.0
ethA 4328317 c.-844C>T upstream_gene_variant 0.98
whiB6 4338595 c.-75delG upstream_gene_variant 1.0