Run ID: ERR4553771
Sample name:
Date: 01-04-2023 06:20:06
Number of reads: 2140723
Percentage reads mapped: 99.56
Strain:
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage1.2.2 | Indo-Oceanic | EAI1 | RD239 | 0.98 |
lineage1.2.2.2 | Indo-Oceanic | NA | RD239 | 0.98 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761161 | p.Leu452Pro | missense_variant | 0.94 | rifampicin |
fabG1 | 1673425 | c.-15C>T | upstream_gene_variant | 0.67 | isoniazid, ethionamide |
inhA | 1674262 | p.Ile21Val | missense_variant | 1.0 | isoniazid |
embB | 4248003 | p.Gln497Arg | missense_variant | 0.94 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5075 | c.-165C>T | upstream_gene_variant | 0.99 |
gyrB | 6112 | p.Met291Ile | missense_variant | 0.67 |
gyrA | 7268 | c.-34C>T | upstream_gene_variant | 0.95 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8452 | p.Ala384Val | missense_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 0.75 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.36 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776555 | c.1926C>T | synonymous_variant | 1.0 |
mmpR5 | 779392 | p.Arg135Trp | missense_variant | 0.97 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1407467 | c.-127C>A | upstream_gene_variant | 0.99 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102913 | p.Ala44Thr | missense_variant | 0.92 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168742 | p.Gly624Asp | missense_variant | 0.96 |
PPE35 | 2169071 | c.1542A>C | synonymous_variant | 0.88 |
PPE35 | 2169199 | p.Val472Leu | missense_variant | 0.94 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 0.96 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3086890 | p.Ala24Gly | missense_variant | 0.93 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.17 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
fprA | 3475370 | p.Leu455Arg | missense_variant | 0.97 |
clpC1 | 4040517 | p.Val63Ala | missense_variant | 0.45 |
embC | 4240671 | p.Thr270Ile | missense_variant | 0.97 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4248319 | c.1806A>T | synonymous_variant | 0.21 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 0.78 |
ethA | 4326148 | c.1326G>T | synonymous_variant | 0.96 |
ethA | 4326439 | p.Asn345Lys | missense_variant | 0.98 |
whiB6 | 4338203 | p.Arg107Cys | missense_variant | 0.94 |
whiB6 | 4338596 | c.-75G>A | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407727 | p.Met159Arg | missense_variant | 0.94 |
gid | 4407873 | c.330G>T | synonymous_variant | 0.33 |