Run ID: ERR4810804
Sample name:
Date: 20-10-2023 00:19:14
Number of reads: 7800117
Percentage reads mapped: 99.42
Strain: lineage4.5;lineage4.4.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 0.84 |
lineage4.4 | Euro-American | S;T | None | 0.16 |
lineage4.4.2 | Euro-American | T1;T2 | None | 0.16 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7892 | c.591G>A | synonymous_variant | 0.81 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620029 | c.139C>T | synonymous_variant | 0.84 |
ccsA | 620566 | p.Asp226Asn | missense_variant | 0.87 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170568 | p.Ile15Met | missense_variant | 0.88 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv2752c | 3066099 | p.Met31Ile | missense_variant | 0.16 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 0.15 |
Rv3083 | 3448727 | p.Leu75Arg | missense_variant | 0.14 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474526 | p.Ala174Thr | missense_variant | 0.85 |
alr | 3840576 | p.Ala282Glu | missense_variant | 0.12 |
rpoA | 3878575 | c.-68C>T | upstream_gene_variant | 0.91 |
clpC1 | 4038318 | p.Pro796Leu | missense_variant | 0.83 |
clpC1 | 4039058 | p.Phe549Leu | missense_variant | 0.16 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243991 | c.759T>G | synonymous_variant | 0.23 |
embB | 4246508 | c.-6G>A | upstream_gene_variant | 0.14 |
embB | 4248548 | p.Ala679Thr | missense_variant | 0.82 |
aftB | 4267494 | p.Gly448Ala | missense_variant | 0.13 |
aftB | 4268928 | c.-92C>T | upstream_gene_variant | 0.19 |
aftB | 4269375 | c.-539G>A | upstream_gene_variant | 0.18 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |