Run ID: ERR4812773
Sample name:
Date: 01-04-2023 12:19:30
Number of reads: 484007
Percentage reads mapped: 98.21
Strain: lineage4.1.2.1
Drug-resistance: HR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 0.98 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 0.98 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
fabG1 | 1673425 | c.-15C>T | upstream_gene_variant | 1.0 | isoniazid, ethionamide |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
ethA | 4326278 | p.Ser399* | stop_gained | 1.0 | ethionamide |
gid | 4407985 | p.Gly73Ala | missense_variant | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781751 | c.192G>T | synonymous_variant | 0.11 |
fbiC | 1304808 | c.1878C>A | synonymous_variant | 0.18 |
fbiC | 1304866 | p.Gly646Trp | missense_variant | 0.17 |
embR | 1416992 | p.Lys119Arg | missense_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1476540 | n.2883C>T | non_coding_transcript_exon_variant | 0.25 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2222109 | c.1056C>A | synonymous_variant | 0.13 |
Rv1979c | 2222501 | p.Ala222Thr | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
Rv2752c | 3064821 | c.1371C>T | synonymous_variant | 0.13 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiB | 3641557 | p.Ser8Cys | missense_variant | 0.17 |
rpoA | 3877929 | c.579C>A | synonymous_variant | 0.11 |
rpoA | 3878619 | c.-112A>C | upstream_gene_variant | 0.3 |
clpC1 | 4040330 | c.375C>A | synonymous_variant | 0.14 |
panD | 4044326 | c.-45C>A | upstream_gene_variant | 0.17 |
embC | 4241659 | c.1797G>T | synonymous_variant | 0.2 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4249136 | p.Val875Phe | missense_variant | 0.15 |
aftB | 4267873 | p.Gln322Glu | missense_variant | 0.85 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |