Run ID: ERR4812813
Sample name:
Date: 01-04-2023 12:21:07
Number of reads: 4572282
Percentage reads mapped: 99.44
Strain: lineage4.1.2.1
Drug-resistance: HR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
fabG1 | 1673425 | c.-15C>T | upstream_gene_variant | 1.0 | isoniazid, ethionamide |
embB | 4247728 | p.Glu405Asp | missense_variant | 0.11 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575281 | c.-67C>A | upstream_gene_variant | 0.14 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
mshA | 575763 | p.Ala139Val | missense_variant | 0.11 |
mshA | 576683 | p.Gly446Ser | missense_variant | 0.2 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304437 | p.Glu503* | stop_gained | 0.2 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473958 | n.301G>T | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170293 | p.Pro107Leu | missense_variant | 0.14 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
kasA | 2519021 | p.Ala303Ser | missense_variant | 0.15 |
eis | 2715077 | p.Ala86Ser | missense_variant | 0.12 |
folC | 2746590 | p.Gly337Cys | missense_variant | 0.22 |
thyX | 3067418 | c.528C>A | synonymous_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiB | 3642075 | p.Asp181Tyr | missense_variant | 0.15 |
fbiB | 3642344 | c.810G>A | synonymous_variant | 0.15 |
embC | 4240464 | p.Phe201Ser | missense_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4243644 | p.Ala138Thr | missense_variant | 0.13 |
embA | 4244453 | c.1221G>A | synonymous_variant | 0.33 |
embB | 4247731 | c.1218C>A | synonymous_variant | 0.11 |
aftB | 4268970 | c.-134G>A | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |