Run ID: ERR4813498
Sample name:
Date: 01-04-2023 12:47:21
Number of reads: 2505418
Percentage reads mapped: 98.78
Strain: lineage4.1.1;lineage2.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 0.1 |
lineage4 | Euro-American | LAM;T;S;X;H | None | 0.88 |
lineage4.1 | Euro-American | T;X;H | None | 0.89 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 0.16 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 0.06 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 0.89 |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6052 | p.Ile271Met | missense_variant | 0.83 |
gyrB | 7005 | p.Gly589Val | missense_variant | 0.18 |
gyrB | 7221 | p.Ser661Thr | missense_variant | 0.87 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 0.22 |
mshA | 575729 | p.Gln128Lys | missense_variant | 0.15 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.12 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 0.94 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 0.11 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 0.14 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1416699 | p.Leu217Val | missense_variant | 0.89 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 0.15 |
PPE35 | 2170273 | p.Arg114Cys | missense_variant | 0.14 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
thyX | 3067945 | p.Val1Met | missense_variant | 0.7 |
thyA | 3074588 | c.-117A>G | upstream_gene_variant | 0.78 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 0.16 |
rpoA | 3878554 | c.-47C>A | upstream_gene_variant | 0.14 |
clpC1 | 4039958 | c.747G>A | synonymous_variant | 0.16 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 0.91 |
embA | 4243460 | c.228C>T | synonymous_variant | 0.1 |
embA | 4243661 | c.429C>T | synonymous_variant | 0.12 |
embA | 4244371 | p.Arg380His | missense_variant | 0.12 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.25 |
embB | 4247033 | p.Ser174Arg | missense_variant | 0.29 |
embB | 4247709 | p.Asn399Thr | missense_variant | 0.18 |
embB | 4249408 | c.2895G>A | synonymous_variant | 0.92 |
ethA | 4326116 | p.Thr453Ile | missense_variant | 0.82 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 0.11 |
gid | 4407927 | p.Glu92Asp | missense_variant | 0.13 |