Run ID: ERR4813523
Sample name:
Date: 01-04-2023 12:48:29
Number of reads: 700017
Percentage reads mapped: 99.07
Strain:
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrA | 7570 | p.Ala90Val | missense_variant | 0.5 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
gyrA | 7582 | p.Asp94Ala | missense_variant | 0.4 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
mshA | 576079 | c.732G>T | synonymous_variant | 0.25 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoB | 761275 | p.Leu490Pro | missense_variant | 0.11 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
rpoC | 766419 | p.Gln1017Arg | missense_variant | 0.11 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpR5 | 779473 | p.Gly162Arg | missense_variant | 0.11 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303758 | c.828G>C | synonymous_variant | 0.18 |
fbiC | 1304262 | p.Trp444* | stop_gained | 0.5 |
Rv1258c | 1406527 | c.811_813dupGGC | conservative_inframe_insertion | 0.12 |
atpE | 1461036 | c.-9G>T | upstream_gene_variant | 0.11 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472556 | n.713delG | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475059 | n.1402G>A | non_coding_transcript_exon_variant | 0.15 |
rpsA | 1833510 | c.-31delG | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918164 | c.225G>A | synonymous_variant | 1.0 |
tlyA | 1918405 | p.Ser156Pro | missense_variant | 0.33 |
katG | 2154010 | p.Asn701Ser | missense_variant | 0.1 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
eis | 2715295 | p.Trp13* | stop_gained | 0.13 |
Rv2752c | 3065532 | c.659delC | frameshift_variant | 1.0 |
Rv2752c | 3065737 | p.Asp152Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339200 | p.Pro28Leu | missense_variant | 0.13 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiB | 3642420 | p.Arg296* | stop_gained | 0.29 |
alr | 3840630 | p.Pro264Arg | missense_variant | 0.13 |
rpoA | 3878630 | c.-123G>C | upstream_gene_variant | 0.2 |
clpC1 | 4039552 | p.Leu385Met | missense_variant | 0.12 |
embC | 4241834 | p.Arg658* | stop_gained | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 0.88 |
aftB | 4267526 | c.1311C>T | synonymous_variant | 0.12 |
aftB | 4267812 | p.Pro342Leu | missense_variant | 0.18 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |