Run ID: ERR4814953
Sample name:
Date: 01-04-2023 13:35:11
Number of reads: 786966
Percentage reads mapped: 99.31
Strain: lineage4.6.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
lineage4.6.1 | Euro-American (Uganda) | T2 | RD724 | 1.0 |
lineage4.6.1.1 | Euro-American | T2-Uganda | RD724 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7539 | p.Thr80Ala | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9269 | c.1968C>T | synonymous_variant | 0.11 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 619758 | c.-133G>A | upstream_gene_variant | 0.18 |
rpoC | 766690 | c.3321G>A | synonymous_variant | 0.13 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpR5 | 779258 | p.Arg90His | missense_variant | 0.13 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406867 | c.474G>T | synonymous_variant | 0.11 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2167745 | c.2868C>G | synonymous_variant | 0.12 |
PPE35 | 2169902 | p.Leu237Phe | missense_variant | 0.17 |
PPE35 | 2169910 | p.Asn235Tyr | missense_variant | 0.17 |
PPE35 | 2170220 | c.393C>G | synonymous_variant | 0.19 |
PPE35 | 2170229 | c.384A>G | synonymous_variant | 0.12 |
PPE35 | 2170232 | c.381T>A | synonymous_variant | 0.12 |
PPE35 | 2170238 | c.375T>G | synonymous_variant | 0.13 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289847 | c.-606C>T | upstream_gene_variant | 0.13 |
folC | 2746615 | c.984C>T | synonymous_variant | 1.0 |
pepQ | 2860184 | c.229_234delCGCGCG | conservative_inframe_deletion | 0.11 |
Rv2752c | 3065102 | p.Thr364Pro | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
clpC1 | 4039484 | c.1221T>G | synonymous_variant | 0.27 |
embC | 4240648 | c.786C>T | synonymous_variant | 0.22 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4267729 | p.Trp370Arg | missense_variant | 0.14 |
ethA | 4328329 | c.-856C>G | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |