Run ID: ERR4815457
Sample name:
Date: 01-04-2023 13:52:39
Number of reads: 4764666
Percentage reads mapped: 99.23
Strain: lineage4.1.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.22 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
rpoC | 765838 | c.2469G>A | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472188 | n.343A>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472707 | n.862A>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472953 | n.1108G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472958 | n.1113A>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472959 | n.1114T>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472963 | n.1118G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472987 | n.1142G>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472988 | n.1143T>G | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473276 | n.1431A>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473294 | n.1449A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473301 | n.1456T>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475879 | n.2222T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
ethR | 4327893 | c.346_347dupTC | frameshift_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338676 | c.-155T>C | upstream_gene_variant | 1.0 |