TB-Profiler result

Run: ERR4815935
Summary

Run ID: ERR4815935

Sample name:

Date: 01-04-2023 14:08:49

Number of reads: 1050832

Percentage reads mapped: 99.86

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6492 p.Ile418Asn missense_variant 0.1
mshA 576499 c.1152G>T synonymous_variant 0.13
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
fabG1 1674076 p.Thr213Pro missense_variant 0.26
inhA 1674443 p.Ala81Glu missense_variant 0.13
inhA 1674468 p.Asp89Glu missense_variant 0.12
ndh 2102383 c.660G>T synonymous_variant 0.12
thyX 3067421 c.525G>A synonymous_variant 0.11
fbiD 3339521 p.His135Arg missense_variant 0.14
Rv3083 3449056 p.Ser185Arg missense_variant 0.13