Run ID: ERR4815999
Sample name:
Date: 01-04-2023 14:11:07
Number of reads: 1768287
Percentage reads mapped: 98.89
Strain: lineage4.1.2.1
Drug-resistance: HR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
fabG1 | 1673425 | c.-15C>T | upstream_gene_variant | 1.0 | isoniazid, ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475892 | n.2235A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475897 | n.2240T>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475900 | n.2243A>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475906 | n.2249C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475938 | n.2281C>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475945 | n.2288C>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476337 | n.2680C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170173 | c.437_439dupTGG | conservative_inframe_insertion | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embC | 4242806 | p.Phe982Ile | missense_variant | 1.0 |
embA | 4243730 | p.Lys166Asn | missense_variant | 1.0 |
ethA | 4326996 | p.Pro160Thr | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |