Run ID: ERR4816457
Sample name:
Date: 01-04-2023 14:26:34
Number of reads: 3070736
Percentage reads mapped: 97.82
Strain: lineage4.1.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.5 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
rpoB | 760115 | c.309C>T | synonymous_variant | 0.98 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472122 | n.277G>T | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472124 | n.279C>T | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472255 | n.410A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472258 | n.413A>G | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472755 | n.910G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472934 | n.1090delG | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1473879 | n.226delA | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476429 | n.2772A>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3449073 | c.570C>T | synonymous_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |