Run ID: ERR4816670
Sample name:
Date: 01-04-2023 14:33:55
Number of reads: 4547058
Percentage reads mapped: 98.89
Strain: lineage4.3.4.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 | 1.0 |
lineage4.3.4.2 | Euro-American (LAM) | LAM1;LAM4;LAM11 | RD174 | 1.0 |
lineage4.3.4.2.1 | Euro-American (LAM) | LAM11 | RD174 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.71 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6140 | p.Val301Leu | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472202 | n.361delG | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474904 | n.1247G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474905 | n.1248T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474913 | n.1256T>C | non_coding_transcript_exon_variant | 0.67 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612009 | p.Ala370Thr | missense_variant | 0.99 |
alr | 3840719 | c.702A>G | synonymous_variant | 1.0 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
ethA | 4328260 | c.-787G>A | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |