Run ID: ERR4817292
Sample name:
Date: 01-04-2023 14:54:34
Number of reads: 1088483
Percentage reads mapped: 58.57
Strain: lineage4.3.4.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 | 1.0 |
lineage4.3.4.2 | Euro-American (LAM) | LAM1;LAM4;LAM11 | RD174 | 1.0 |
lineage4.3.4.2.1 | Euro-American (LAM) | LAM11 | RD174 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6140 | p.Val301Leu | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 762863 | c.-507T>C | upstream_gene_variant | 0.12 |
rpoB | 762872 | p.Met1022Ile | missense_variant | 0.12 |
rpoB | 762878 | p.Ile1024Met | missense_variant | 0.12 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.12 |
rpoC | 762917 | c.-453C>G | upstream_gene_variant | 0.12 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 0.12 |
rpoB | 762925 | p.Thr1040Ile | missense_variant | 0.12 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.12 |
rpoB | 762939 | p.Met1045Leu | missense_variant | 0.11 |
rpoB | 762942 | p.Ile1046Val | missense_variant | 0.11 |
rpoC | 762956 | c.-414G>C | upstream_gene_variant | 0.11 |
rpoC | 762965 | c.-405T>C | upstream_gene_variant | 0.1 |
rpoC | 762980 | c.-390T>C | upstream_gene_variant | 0.11 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.11 |
rpoC | 762995 | c.-375G>C | upstream_gene_variant | 0.11 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775986 | p.His832Arg | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1476336 | n.2679C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476356 | n.2699C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476357 | n.2700T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476384 | n.2727G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476443 | n.2786G>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476455 | n.2798C>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476521 | n.2864C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476528 | n.2871A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476529 | n.2872A>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476531 | n.2874T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476540 | n.2883C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.29 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103225 | c.-183A>C | upstream_gene_variant | 0.23 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ahpC | 2726265 | p.Lys25Gln | missense_variant | 0.18 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612009 | p.Ala370Thr | missense_variant | 1.0 |
alr | 3840719 | c.702A>G | synonymous_variant | 1.0 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244305 | p.Arg358Leu | missense_variant | 0.11 |
embA | 4245528 | p.Gly766Arg | missense_variant | 0.13 |
whiB6 | 4338203 | p.Arg107Cys | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |