Run ID: ERR4818870
Sample name:
Date: 01-04-2023 15:47:58
Number of reads: 663042
Percentage reads mapped: 98.63
Strain: lineage3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9007 | p.Phe569Ser | missense_variant | 0.13 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
ccsA | 620503 | p.Glu205* | stop_gained | 0.12 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoB | 762008 | c.2202C>T | synonymous_variant | 0.2 |
rpoB | 762014 | c.2208C>T | synonymous_variant | 0.18 |
rpoB | 762017 | c.2211A>G | synonymous_variant | 0.18 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764725 | p.Phe452Leu | missense_variant | 0.11 |
rpoC | 765290 | p.Arg641Trp | missense_variant | 0.11 |
rpoC | 765605 | p.Leu746Ile | missense_variant | 0.18 |
rpoC | 766004 | p.Asp879Tyr | missense_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776331 | p.Arg717Leu | missense_variant | 0.18 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1416614 | p.Pro245Leu | missense_variant | 0.11 |
embR | 1417335 | p.Ala5Thr | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
thyA | 3074566 | c.-95G>T | upstream_gene_variant | 0.2 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3877553 | p.Glu319Gln | missense_variant | 0.14 |
clpC1 | 4038272 | c.2433T>C | synonymous_variant | 0.17 |
clpC1 | 4038275 | c.2430A>G | synonymous_variant | 0.17 |
clpC1 | 4038278 | c.2427T>C | synonymous_variant | 0.17 |
panD | 4043922 | c.360T>C | synonymous_variant | 0.18 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244064 | p.Leu278Met | missense_variant | 0.13 |
aftB | 4269084 | c.-248G>T | upstream_gene_variant | 0.2 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |