Run ID: ERR4819649
Sample name:
Date: 01-04-2023 16:13:51
Number of reads: 1494570
Percentage reads mapped: 99.91
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
mshA | 576751 | p.Lys468Asn | missense_variant | 0.22 |
rpoB | 761152 | p.Leu449Gln | missense_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474425 | n.768A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474428 | n.771C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475421 | n.1764C>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475724 | n.2067C>A | non_coding_transcript_exon_variant | 0.18 |