Run ID: ERR4820247
Sample name:
Date: 01-04-2023 16:34:13
Number of reads: 102891
Percentage reads mapped: 12.5
Strain: lineage4.9
Drug-resistance: HR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 0.87 |
lineage4.3.4.1 | Euro-American (LAM) | LAM1;LAM2 | RD174 | 0.08 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 1.0 | streptomycin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 8715 | p.Pro472Ser | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775806 | p.Met892Lys | missense_variant | 0.29 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472612 | n.767G>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472681 | n.837_838delTT | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472687 | n.842_843insC | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473147 | n.1302G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473148 | n.1303G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473150 | n.1305T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473161 | n.1316A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473163 | n.1318C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473164 | n.1319C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473199 | n.1356delA | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476524 | n.2867C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 1.0 |
katG | 2156105 | p.Glu3Lys | missense_variant | 0.67 |
PPE35 | 2168476 | p.Pro713Ala | missense_variant | 0.67 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ahpC | 2725969 | c.-224_-223insG | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087518 | c.699C>T | synonymous_variant | 1.0 |
fbiD | 3339738 | c.621C>A | synonymous_variant | 0.5 |
Rv3236c | 3612009 | p.Ala370Thr | missense_variant | 1.0 |
Rv3236c | 3612768 | p.Ala117Pro | missense_variant | 1.0 |
alr | 3841006 | p.Asp139His | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |