Run ID: ERR4820985
Sample name:
Date: 01-04-2023 16:59:55
Number of reads: 951126
Percentage reads mapped: 99.61
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6931 | c.-371A>G | upstream_gene_variant | 0.15 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
ccsA | 619976 | p.Leu29Pro | missense_variant | 0.22 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777122 | c.1359C>T | synonymous_variant | 0.11 |
mmpL5 | 778347 | p.Val45Gly | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473090 | n.1245G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475944 | n.2287G>T | non_coding_transcript_exon_variant | 0.5 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2101999 | c.1044G>A | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2288690 | p.Cys184Trp | missense_variant | 0.12 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ahpC | 2726338 | p.Val49Gly | missense_variant | 0.19 |
folC | 2747629 | c.-31A>G | upstream_gene_variant | 0.14 |
pepQ | 2860116 | c.303G>A | synonymous_variant | 0.11 |
ribD | 2987478 | p.Thr214Ala | missense_variant | 0.18 |
thyX | 3067255 | p.Glu231Lys | missense_variant | 0.11 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339597 | c.480G>A | synonymous_variant | 0.11 |
Rv3083 | 3449342 | p.Ser280Tyr | missense_variant | 0.11 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474056 | p.Phe17Ser | missense_variant | 0.1 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4244298 | c.1068delC | frameshift_variant | 0.11 |
aftB | 4268602 | c.235C>T | synonymous_variant | 0.12 |
ethA | 4326662 | p.Gln271Arg | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |