Run ID: ERR4821109
Sample name:
Date: 01-04-2023 17:04:05
Number of reads: 1104821
Percentage reads mapped: 88.28
Strain: lineage4.1.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.71 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
rpoB | 759620 | c.-187A>C | upstream_gene_variant | 0.2 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304855 | p.Val642Asp | missense_variant | 0.5 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472498 | n.653C>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.74 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472668 | n.825_829delGGGTT | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472675 | n.830_831insAGAC | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472680 | n.835C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472682 | n.837T>C | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472683 | n.838T>G | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472689 | n.844C>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.47 |
rrs | 1473278 | n.1433T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476359 | n.2702C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476443 | n.2786G>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476455 | n.2798C>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.29 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170349 | p.Thr88Ala | missense_variant | 0.11 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4243476 | c.244C>T | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |